Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCANP13611 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCANP13611 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VCANP13611 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.17■□□□□ 0.66
VCANP13611 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
VCANP13611 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VCANP13611 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC19.17■□□□□ 0.66
VCANP13611 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC19.17■□□□□ 0.66
VCANP13611 AL031432.2-201ENST00000566714 459 ntBASIC19.17■□□□□ 0.66
VCANP13611 AL928711.1-201ENST00000570165 459 ntBASIC19.17■□□□□ 0.66
VCANP13611 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC19.17■□□□□ 0.66
VCANP13611 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.17■□□□□ 0.66
VCANP13611 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.17■□□□□ 0.66
VCANP13611 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VCANP13611 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VCANP13611 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.17■□□□□ 0.66
VCANP13611 AL078644.1-201ENST00000609881 752 ntBASIC19.17■□□□□ 0.66
VCANP13611 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.17■□□□□ 0.66
VCANP13611 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.17■□□□□ 0.66
VCANP13611 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VCANP13611 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VCANP13611 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.16■□□□□ 0.66
VCANP13611 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCANP13611 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
VCANP13611 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.16■□□□□ 0.66
VCANP13611 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC19.16■□□□□ 0.66
VCANP13611 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VCANP13611 MIR3180-5-201ENST00000583743 153 ntBASIC19.16■□□□□ 0.66
VCANP13611 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC19.16■□□□□ 0.66
VCANP13611 AC092865.6-201ENST00000642101 219 ntBASIC19.16■□□□□ 0.66
VCANP13611 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.16■□□□□ 0.66
VCANP13611 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VCANP13611 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCANP13611 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
VCANP13611 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
VCANP13611 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC19.16■□□□□ 0.66
VCANP13611 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.16■□□□□ 0.66
VCANP13611 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.16■□□□□ 0.66
VCANP13611 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCANP13611 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VCANP13611 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.16■□□□□ 0.66
VCANP13611 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCANP13611 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VCANP13611 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.16■□□□□ 0.66
VCANP13611 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
VCANP13611 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.16■□□□□ 0.66
VCANP13611 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCANP13611 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCANP13611 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.16■□□□□ 0.66
VCANP13611 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VCANP13611 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC19.16■□□□□ 0.66
VCANP13611 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.16■□□□□ 0.66
VCANP13611 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
VCANP13611 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VCANP13611 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.16■□□□□ 0.66
VCANP13611 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.16■□□□□ 0.66
VCANP13611 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.15■□□□□ 0.66
VCANP13611 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
VCANP13611 GUSBP12-201ENST00000513727 720 ntBASIC19.15■□□□□ 0.66
VCANP13611 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC19.15■□□□□ 0.66
VCANP13611 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.15■□□□□ 0.66
VCANP13611 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VCANP13611 AC104417.2-201ENST00000562989 1793 ntBASIC19.15■□□□□ 0.66
VCANP13611 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VCANP13611 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.15■□□□□ 0.66
VCANP13611 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VCANP13611 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.15■□□□□ 0.66
VCANP13611 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VCANP13611 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.15■□□□□ 0.66
VCANP13611 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC19.15■□□□□ 0.66
VCANP13611 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.15■□□□□ 0.66
VCANP13611 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
VCANP13611 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VCANP13611 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.15■□□□□ 0.66
VCANP13611 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VCANP13611 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.15■□□□□ 0.66
VCANP13611 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VCANP13611 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC19.15■□□□□ 0.66
VCANP13611 OARD1-208ENST00000469104 704 ntTSL 2 BASIC19.15■□□□□ 0.66
VCANP13611 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.15■□□□□ 0.66
VCANP13611 RN7SL204P-201ENST00000582831 262 ntBASIC19.15■□□□□ 0.66
VCANP13611 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC19.15■□□□□ 0.66
VCANP13611 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.14■□□□□ 0.66
VCANP13611 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
VCANP13611 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VCANP13611 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VCANP13611 STOM-202ENST00000347359 870 ntTSL 2 BASIC19.14■□□□□ 0.65
VCANP13611 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC19.14■□□□□ 0.65
VCANP13611 AL359881.2-201ENST00000602973 570 ntBASIC19.14■□□□□ 0.65
VCANP13611 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.14■□□□□ 0.65
VCANP13611 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VCANP13611 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VCANP13611 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VCANP13611 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VCANP13611 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
VCANP13611 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.65
VCANP13611 AC121338.2-201ENST00000622535 1744 ntBASIC19.14■□□□□ 0.65
VCANP13611 AC073592.5-201ENST00000624854 528 ntBASIC19.14■□□□□ 0.65
VCANP13611 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VCANP13611 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms