Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SEMA3DO95025 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SEMA3DO95025 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SEMA3DO95025 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SEMA3DO95025 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SEMA3DO95025 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.8■□□□□ 0.44
SEMA3DO95025 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.8■□□□□ 0.44
SEMA3DO95025 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
SEMA3DO95025 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.8■□□□□ 0.44
SEMA3DO95025 MIR564-202ENST00000385049 94 ntBASIC17.8■□□□□ 0.44
SEMA3DO95025 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SEMA3DO95025 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.8■□□□□ 0.44
SEMA3DO95025 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SEMA3DO95025 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.8■□□□□ 0.44
SEMA3DO95025 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.8■□□□□ 0.44
SEMA3DO95025 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.8■□□□□ 0.44
SEMA3DO95025 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SEMA3DO95025 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SEMA3DO95025 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SEMA3DO95025 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SEMA3DO95025 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SEMA3DO95025 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SEMA3DO95025 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SEMA3DO95025 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SEMA3DO95025 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.79■□□□□ 0.44
SEMA3DO95025 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.79■□□□□ 0.44
SEMA3DO95025 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
SEMA3DO95025 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.79■□□□□ 0.44
SEMA3DO95025 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SEMA3DO95025 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SEMA3DO95025 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SEMA3DO95025 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
SEMA3DO95025 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.79■□□□□ 0.44
SEMA3DO95025 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SEMA3DO95025 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.79■□□□□ 0.44
SEMA3DO95025 CCR12P-201ENST00000446203 998 ntBASIC17.79■□□□□ 0.44
SEMA3DO95025 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.79■□□□□ 0.44
SEMA3DO95025 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.79■□□□□ 0.44
SEMA3DO95025 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SEMA3DO95025 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.79■□□□□ 0.44
SEMA3DO95025 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.79■□□□□ 0.44
SEMA3DO95025 C2orf69P3-201ENST00000565542 1120 ntBASIC17.79■□□□□ 0.44
SEMA3DO95025 AL353719.1-201ENST00000566847 864 ntBASIC17.79■□□□□ 0.44
SEMA3DO95025 MIR3180-5-201ENST00000583743 153 ntBASIC17.79■□□□□ 0.44
SEMA3DO95025 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SEMA3DO95025 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SEMA3DO95025 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.79■□□□□ 0.44
SEMA3DO95025 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SEMA3DO95025 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SEMA3DO95025 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.79■□□□□ 0.44
SEMA3DO95025 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SEMA3DO95025 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SEMA3DO95025 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
SEMA3DO95025 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.78■□□□□ 0.44
SEMA3DO95025 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.78■□□□□ 0.44
SEMA3DO95025 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
SEMA3DO95025 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.78■□□□□ 0.44
SEMA3DO95025 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.78■□□□□ 0.44
SEMA3DO95025 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 MIR1238-201ENST00000408483 83 ntBASIC17.78■□□□□ 0.44
SEMA3DO95025 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.78■□□□□ 0.44
SEMA3DO95025 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.78■□□□□ 0.44
SEMA3DO95025 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SEMA3DO95025 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.78■□□□□ 0.44
SEMA3DO95025 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.78■□□□□ 0.44
SEMA3DO95025 MIR4674-201ENST00000582457 87 ntBASIC17.78■□□□□ 0.44
SEMA3DO95025 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.78■□□□□ 0.44
SEMA3DO95025 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.78■□□□□ 0.44
SEMA3DO95025 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.78■□□□□ 0.44
SEMA3DO95025 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SEMA3DO95025 AC092338.2-201ENST00000568827 1415 ntBASIC17.78■□□□□ 0.44
SEMA3DO95025 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SEMA3DO95025 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SEMA3DO95025 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.78■□□□□ 0.44
SEMA3DO95025 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.78■□□□□ 0.44
SEMA3DO95025 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
SEMA3DO95025 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
SEMA3DO95025 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SEMA3DO95025 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.77■□□□□ 0.44
SEMA3DO95025 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SEMA3DO95025 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
SEMA3DO95025 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SEMA3DO95025 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SEMA3DO95025 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms