Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXC11O43248 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC11O43248 KRT89P-201ENST00000620027 1478 ntBASIC18.91■□□□□ 0.62
HOXC11O43248 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC11O43248 AL161938.1-201ENST00000569833 2180 ntBASIC18.91■□□□□ 0.62
HOXC11O43248 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.91■□□□□ 0.62
HOXC11O43248 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXC11O43248 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
HOXC11O43248 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC11O43248 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC11O43248 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.91■□□□□ 0.62
HOXC11O43248 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXC11O43248 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.91■□□□□ 0.62
HOXC11O43248 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.91■□□□□ 0.62
HOXC11O43248 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.91■□□□□ 0.62
HOXC11O43248 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
HOXC11O43248 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC11O43248 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
HOXC11O43248 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
HOXC11O43248 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HOXC11O43248 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.9■□□□□ 0.62
HOXC11O43248 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.9■□□□□ 0.62
HOXC11O43248 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC11O43248 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC11O43248 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC11O43248 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC11O43248 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.9■□□□□ 0.62
HOXC11O43248 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
HOXC11O43248 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
HOXC11O43248 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC11O43248 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
HOXC11O43248 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
HOXC11O43248 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC11O43248 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.9■□□□□ 0.62
HOXC11O43248 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.9■□□□□ 0.62
HOXC11O43248 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.9■□□□□ 0.62
HOXC11O43248 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC11O43248 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC11O43248 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC11O43248 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC11O43248 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.9■□□□□ 0.62
HOXC11O43248 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
HOXC11O43248 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
HOXC11O43248 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.9■□□□□ 0.62
HOXC11O43248 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
HOXC11O43248 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
HOXC11O43248 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
HOXC11O43248 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
HOXC11O43248 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.89■□□□□ 0.61
HOXC11O43248 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.89■□□□□ 0.61
HOXC11O43248 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC11O43248 LINC00265-3P-201ENST00000447588 903 ntBASIC18.89■□□□□ 0.61
HOXC11O43248 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.89■□□□□ 0.61
HOXC11O43248 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.89■□□□□ 0.61
HOXC11O43248 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.89■□□□□ 0.61
HOXC11O43248 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
HOXC11O43248 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.89■□□□□ 0.61
HOXC11O43248 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.89■□□□□ 0.61
HOXC11O43248 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC11O43248 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC11O43248 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC11O43248 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC11O43248 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
HOXC11O43248 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
HOXC11O43248 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC11O43248 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC11O43248 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
HOXC11O43248 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.89■□□□□ 0.61
HOXC11O43248 AL163051.1-201ENST00000569214 1512 ntBASIC18.89■□□□□ 0.61
HOXC11O43248 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC11O43248 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC11O43248 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
HOXC11O43248 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC11O43248 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC11O43248 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.88■□□□□ 0.61
HOXC11O43248 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC11O43248 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC11O43248 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.88■□□□□ 0.61
HOXC11O43248 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC11O43248 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC11O43248 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC11O43248 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
HOXC11O43248 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC11O43248 TOB2P1-201ENST00000469761 992 ntBASIC18.88■□□□□ 0.61
HOXC11O43248 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC11O43248 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.88■□□□□ 0.61
HOXC11O43248 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC11O43248 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC11O43248 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC11O43248 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.88■□□□□ 0.61
HOXC11O43248 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC11O43248 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC11O43248 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
HOXC11O43248 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXC11O43248 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC11O43248 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC11O43248 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC11O43248 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC11O43248 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXC11O43248 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms