Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRAV1-1A0A0B4J248 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC14.52□□□□□ -0.09
TRAV1-1A0A0B4J248 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC14.52□□□□□ -0.09
TRAV1-1A0A0B4J248 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC14.52□□□□□ -0.09
TRAV1-1A0A0B4J248 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
TRAV1-1A0A0B4J248 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC14.52□□□□□ -0.09
TRAV1-1A0A0B4J248 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC14.52□□□□□ -0.09
TRAV1-1A0A0B4J248 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
TRAV1-1A0A0B4J248 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
TRAV1-1A0A0B4J248 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
TRAV1-1A0A0B4J248 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRAV1-1A0A0B4J248 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRAV1-1A0A0B4J248 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRAV1-1A0A0B4J248 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRAV1-1A0A0B4J248 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRAV1-1A0A0B4J248 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 KATNBL1P6-202ENST00000562413 1466 ntBASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 KRT18P16-201ENST00000510337 1294 ntBASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 AL031432.3-201ENST00000607698 485 ntBASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 AL096828.2-201ENST00000567259 1965 ntBASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRAV1-1A0A0B4J248 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 KRT8P32-201ENST00000512863 1461 ntBASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 HES2-206ENST00000489730 730 ntTSL 2 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC14.5□□□□□ -0.09
TRAV1-1A0A0B4J248 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC14.49□□□□□ -0.09
TRAV1-1A0A0B4J248 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms