Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 ANO7L1-203ENST00000602586 1720 ntBASIC19.45■□□□□ 0.7
USP3Q9Y6I4 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP3Q9Y6I4 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
USP3Q9Y6I4 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 HBZP1-201ENST00000354915 429 ntBASIC19.43■□□□□ 0.7
USP3Q9Y6I4 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.43■□□□□ 0.7
USP3Q9Y6I4 AC083849.1-201ENST00000615227 514 ntBASIC19.43■□□□□ 0.7
USP3Q9Y6I4 AC079602.3-201ENST00000623931 403 ntBASIC19.43■□□□□ 0.7
USP3Q9Y6I4 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
USP3Q9Y6I4 AC112777.1-201ENST00000540175 1423 ntBASIC19.42■□□□□ 0.7
USP3Q9Y6I4 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 AC092597.1-201ENST00000487352 616 ntBASIC19.42■□□□□ 0.7
USP3Q9Y6I4 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 AL121956.5-201ENST00000625261 221 ntBASIC19.42■□□□□ 0.7
USP3Q9Y6I4 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP3Q9Y6I4 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 HLA-F-220ENST00000434407 884 ntBASIC19.41■□□□□ 0.7
USP3Q9Y6I4 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 SPDYE13P-201ENST00000445314 798 ntBASIC19.41■□□□□ 0.7
USP3Q9Y6I4 FAM86EP-206ENST00000510506 987 ntBASIC19.41■□□□□ 0.7
USP3Q9Y6I4 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 AL499627.1-201ENST00000569373 2188 ntBASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms