Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHGA1Q9Y5H4 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 AC139530.3-201ENST00000620344 690 ntBASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.86■□□□□ 0.45
PCDHGA1Q9Y5H4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 AF238378.1-201ENST00000526806 358 ntBASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 AL773604.1-201ENST00000617417 272 ntBASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
PCDHGA1Q9Y5H4 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 AC007952.6-201ENST00000573168 2673 ntBASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 AC003957.1-201ENST00000625108 2673 ntBASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 MIR574-201ENST00000385209 96 ntBASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 KRT18P13-201ENST00000400056 1290 ntBASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 AF228730.7-201ENST00000641842 219 ntBASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PCDHGA1Q9Y5H4 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
PCDHGA1Q9Y5H4 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
PCDHGA1Q9Y5H4 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PCDHGA1Q9Y5H4 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PCDHGA1Q9Y5H4 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PCDHGA1Q9Y5H4 IL9RP2-201ENST00000423948 1312 ntBASIC17.83■□□□□ 0.44
PCDHGA1Q9Y5H4 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
PCDHGA1Q9Y5H4 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PCDHGA1Q9Y5H4 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PCDHGA1Q9Y5H4 NUS1P2-201ENST00000417358 873 ntBASIC17.83■□□□□ 0.44
PCDHGA1Q9Y5H4 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PCDHGA1Q9Y5H4 RNA5SP419-201ENST00000515908 135 ntBASIC17.83■□□□□ 0.44
PCDHGA1Q9Y5H4 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms