Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
BRF2Q9HAW0 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.8■□□□□ 0.44
BRF2Q9HAW0 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
BRF2Q9HAW0 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.8■□□□□ 0.44
BRF2Q9HAW0 TSPY7P-201ENST00000431358 1114 ntBASIC17.8■□□□□ 0.44
BRF2Q9HAW0 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.8■□□□□ 0.44
BRF2Q9HAW0 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.8■□□□□ 0.44
BRF2Q9HAW0 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.8■□□□□ 0.44
BRF2Q9HAW0 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
BRF2Q9HAW0 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
BRF2Q9HAW0 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
BRF2Q9HAW0 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
BRF2Q9HAW0 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
BRF2Q9HAW0 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
BRF2Q9HAW0 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 KRT17P2-201ENST00000300992 1314 ntBASIC17.79■□□□□ 0.44
BRF2Q9HAW0 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 FITM1-202ENST00000559294 800 ntBASIC17.79■□□□□ 0.44
BRF2Q9HAW0 AL353719.1-201ENST00000566847 864 ntBASIC17.79■□□□□ 0.44
BRF2Q9HAW0 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.79■□□□□ 0.44
BRF2Q9HAW0 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 CCR12P-201ENST00000446203 998 ntBASIC17.78■□□□□ 0.44
BRF2Q9HAW0 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 MIR4674-201ENST00000582457 87 ntBASIC17.78■□□□□ 0.44
BRF2Q9HAW0 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRF2Q9HAW0 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BRF2Q9HAW0 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms