Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL25A1Q9BXS0 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL25A1Q9BXS0 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC18.78■□□□□ 0.6
COL25A1Q9BXS0 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL25A1Q9BXS0 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL25A1Q9BXS0 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL25A1Q9BXS0 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL25A1Q9BXS0 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
COL25A1Q9BXS0 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL25A1Q9BXS0 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 HNRNPFP1-201ENST00000391730 1133 ntBASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 RAC2-204ENST00000406508 893 ntTSL 5 BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 GOLGA6L11P-201ENST00000417252 1298 ntBASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 RETN-203ENST00000629642 400 ntTSL 5 BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 AC105339.1-204ENST00000636249 355 ntBASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.77■□□□□ 0.6
COL25A1Q9BXS0 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 U91328.1-201ENST00000437528 223 ntBASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.76■□□□□ 0.59
COL25A1Q9BXS0 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 GPR53P-205ENST00000457298 1084 ntBASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 SRP9-204ENST00000619790 377 ntTSL 2 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.75■□□□□ 0.59
COL25A1Q9BXS0 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL25A1Q9BXS0 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL25A1Q9BXS0 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL25A1Q9BXS0 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL25A1Q9BXS0 FEM1AP1-201ENST00000431297 1995 ntBASIC18.74■□□□□ 0.59
COL25A1Q9BXS0 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
COL25A1Q9BXS0 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.74■□□□□ 0.59
COL25A1Q9BXS0 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL25A1Q9BXS0 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.74■□□□□ 0.59
COL25A1Q9BXS0 RPS2P32-201ENST00000439199 892 ntBASIC18.74■□□□□ 0.59
COL25A1Q9BXS0 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.74■□□□□ 0.59
COL25A1Q9BXS0 HCG4B-203ENST00000450128 991 ntBASIC18.74■□□□□ 0.59
COL25A1Q9BXS0 RN7SL692P-201ENST00000464677 288 ntBASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms