Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 AC083906.6-201ENST00000641366 219 ntBASIC19.83■□□□□ 0.77
PAAF1Q9BRP4 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PAAF1Q9BRP4 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PAAF1Q9BRP4 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.83■□□□□ 0.76
PAAF1Q9BRP4 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PAAF1Q9BRP4 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.83■□□□□ 0.76
PAAF1Q9BRP4 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PAAF1Q9BRP4 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PAAF1Q9BRP4 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
PAAF1Q9BRP4 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PAAF1Q9BRP4 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PAAF1Q9BRP4 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
PAAF1Q9BRP4 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
PAAF1Q9BRP4 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
PAAF1Q9BRP4 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 AP003733.1-201ENST00000491725 852 ntBASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.82■□□□□ 0.76
PAAF1Q9BRP4 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 KRT18P1-202ENST00000452408 1331 ntBASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 TPSP2-201ENST00000561760 610 ntBASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 MIR3652-201ENST00000579335 131 ntBASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 AL390719.2-201ENST00000606993 987 ntBASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
PAAF1Q9BRP4 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PAAF1Q9BRP4 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
PAAF1Q9BRP4 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PAAF1Q9BRP4 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
PAAF1Q9BRP4 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PAAF1Q9BRP4 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PAAF1Q9BRP4 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PAAF1Q9BRP4 AL499627.1-201ENST00000569373 2188 ntBASIC19.8■□□□□ 0.76
PAAF1Q9BRP4 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PAAF1Q9BRP4 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.8■□□□□ 0.76
PAAF1Q9BRP4 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PAAF1Q9BRP4 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PAAF1Q9BRP4 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PAAF1Q9BRP4 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.8■□□□□ 0.76
PAAF1Q9BRP4 KRT18P41-201ENST00000518924 1277 ntBASIC19.8■□□□□ 0.76
PAAF1Q9BRP4 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
PAAF1Q9BRP4 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.8■□□□□ 0.76
PAAF1Q9BRP4 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms