Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 AC138932.1-201ENST00000534164 6830 ntBASIC19.18■□□□□ 0.66
RPRD1AQ96P16 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RPRD1AQ96P16 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RPRD1AQ96P16 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
RPRD1AQ96P16 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 AC018445.3-201ENST00000624177 1945 ntBASIC19.17■□□□□ 0.66
RPRD1AQ96P16 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 HOMER2P1-201ENST00000455653 964 ntBASIC19.17■□□□□ 0.66
RPRD1AQ96P16 AL359075.1-203ENST00000462729 1002 ntBASIC19.17■□□□□ 0.66
RPRD1AQ96P16 SEC1P-202ENST00000473944 940 ntBASIC19.17■□□□□ 0.66
RPRD1AQ96P16 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPRD1AQ96P16 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPRD1AQ96P16 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
RPRD1AQ96P16 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
RPRD1AQ96P16 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPRD1AQ96P16 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RPRD1AQ96P16 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPRD1AQ96P16 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
RPRD1AQ96P16 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPRD1AQ96P16 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
RPRD1AQ96P16 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.16■□□□□ 0.66
RPRD1AQ96P16 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.16■□□□□ 0.66
RPRD1AQ96P16 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RPRD1AQ96P16 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.16■□□□□ 0.66
RPRD1AQ96P16 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.16■□□□□ 0.66
RPRD1AQ96P16 NTF6B-201ENST00000591913 560 ntBASIC19.16■□□□□ 0.66
RPRD1AQ96P16 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
RPRD1AQ96P16 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPRD1AQ96P16 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.16■□□□□ 0.66
RPRD1AQ96P16 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RPRD1AQ96P16 AC087289.5-201ENST00000586076 3175 ntBASIC19.16■□□□□ 0.66
RPRD1AQ96P16 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 FAM8A6P-201ENST00000407496 1135 ntBASIC19.15■□□□□ 0.66
RPRD1AQ96P16 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 AC034232.1-201ENST00000506026 1064 ntBASIC19.15■□□□□ 0.66
RPRD1AQ96P16 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPRD1AQ96P16 AC020763.4-201ENST00000623414 4170 ntBASIC19.14■□□□□ 0.66
RPRD1AQ96P16 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.14■□□□□ 0.66
RPRD1AQ96P16 AC098818.2-201ENST00000564925 2320 ntBASIC19.14■□□□□ 0.66
RPRD1AQ96P16 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RPRD1AQ96P16 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
RPRD1AQ96P16 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.14■□□□□ 0.66
RPRD1AQ96P16 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.14■□□□□ 0.66
RPRD1AQ96P16 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.14■□□□□ 0.66
RPRD1AQ96P16 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
RPRD1AQ96P16 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.14■□□□□ 0.65
RPRD1AQ96P16 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RPRD1AQ96P16 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RPRD1AQ96P16 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RPRD1AQ96P16 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
RPRD1AQ96P16 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms