Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HMGB4Q8WW32 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HMGB4Q8WW32 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
HMGB4Q8WW32 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
HMGB4Q8WW32 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGB4Q8WW32 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB4Q8WW32 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB4Q8WW32 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB4Q8WW32 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB4Q8WW32 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB4Q8WW32 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB4Q8WW32 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.63■□□□□ 0.57
HMGB4Q8WW32 AC099336.1-202ENST00000602961 463 ntBASIC18.63■□□□□ 0.57
HMGB4Q8WW32 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB4Q8WW32 AC233702.3-201ENST00000578656 1387 ntBASIC18.63■□□□□ 0.57
HMGB4Q8WW32 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB4Q8WW32 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.63■□□□□ 0.57
HMGB4Q8WW32 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.63■□□□□ 0.57
HMGB4Q8WW32 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGB4Q8WW32 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGB4Q8WW32 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGB4Q8WW32 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 MIR3180-4-201ENST00000582223 153 ntBASIC18.62■□□□□ 0.57
HMGB4Q8WW32 Z69720.1-201ENST00000601483 472 ntBASIC18.62■□□□□ 0.57
HMGB4Q8WW32 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.62■□□□□ 0.57
HMGB4Q8WW32 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGB4Q8WW32 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms