Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 AC068587.9-201ENST00000641814 219 ntBASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 AL162741.1-201ENST00000565563 1558 ntBASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.66■□□□□ 0.58
HDDC3Q8N4P3 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 GPALPP1-207ENST00000611650 899 ntBASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.65■□□□□ 0.58
HDDC3Q8N4P3 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.64■□□□□ 0.58
HDDC3Q8N4P3 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HDDC3Q8N4P3 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
HDDC3Q8N4P3 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
HDDC3Q8N4P3 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
HDDC3Q8N4P3 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HDDC3Q8N4P3 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HDDC3Q8N4P3 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
HDDC3Q8N4P3 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms