Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 CYP51A1P1-201ENST00000492267 1507 ntBASIC19.78■□□□□ 0.76
USP41Q3LFD5 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP41Q3LFD5 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP41Q3LFD5 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
USP41Q3LFD5 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
USP41Q3LFD5 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
USP41Q3LFD5 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.78■□□□□ 0.76
USP41Q3LFD5 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.78■□□□□ 0.76
USP41Q3LFD5 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
USP41Q3LFD5 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.78■□□□□ 0.76
USP41Q3LFD5 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.78■□□□□ 0.76
USP41Q3LFD5 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.78■□□□□ 0.76
USP41Q3LFD5 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP41Q3LFD5 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
USP41Q3LFD5 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
USP41Q3LFD5 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.78■□□□□ 0.76
USP41Q3LFD5 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.78■□□□□ 0.76
USP41Q3LFD5 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
USP41Q3LFD5 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP41Q3LFD5 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP41Q3LFD5 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP41Q3LFD5 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.77■□□□□ 0.76
USP41Q3LFD5 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP41Q3LFD5 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
USP41Q3LFD5 Z83836.1-201ENST00000624605 1642 ntBASIC19.77■□□□□ 0.76
USP41Q3LFD5 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP41Q3LFD5 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP41Q3LFD5 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP41Q3LFD5 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP41Q3LFD5 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP41Q3LFD5 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
USP41Q3LFD5 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.77■□□□□ 0.76
USP41Q3LFD5 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.77■□□□□ 0.76
USP41Q3LFD5 AP003733.1-201ENST00000491725 852 ntBASIC19.77■□□□□ 0.76
USP41Q3LFD5 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
USP41Q3LFD5 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.77■□□□□ 0.76
USP41Q3LFD5 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.77■□□□□ 0.76
USP41Q3LFD5 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.77■□□□□ 0.76
USP41Q3LFD5 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP41Q3LFD5 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.77■□□□□ 0.76
USP41Q3LFD5 AC087289.5-201ENST00000586076 3175 ntBASIC19.77■□□□□ 0.76
USP41Q3LFD5 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.77■□□□□ 0.76
USP41Q3LFD5 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP41Q3LFD5 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP41Q3LFD5 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP41Q3LFD5 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
USP41Q3LFD5 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
USP41Q3LFD5 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
USP41Q3LFD5 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
USP41Q3LFD5 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
USP41Q3LFD5 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.76■□□□□ 0.75
USP41Q3LFD5 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
USP41Q3LFD5 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP41Q3LFD5 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.76■□□□□ 0.75
USP41Q3LFD5 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP41Q3LFD5 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.76■□□□□ 0.75
USP41Q3LFD5 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP41Q3LFD5 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP41Q3LFD5 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP41Q3LFD5 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP41Q3LFD5 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.76■□□□□ 0.75
USP41Q3LFD5 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP41Q3LFD5 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
USP41Q3LFD5 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP41Q3LFD5 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP41Q3LFD5 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.76■□□□□ 0.75
USP41Q3LFD5 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.76■□□□□ 0.75
USP41Q3LFD5 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP41Q3LFD5 DRAXINP1-201ENST00000437611 948 ntBASIC19.76■□□□□ 0.75
USP41Q3LFD5 NUS1P1-201ENST00000446295 882 ntBASIC19.76■□□□□ 0.75
USP41Q3LFD5 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP41Q3LFD5 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.76■□□□□ 0.75
USP41Q3LFD5 AC005332.3-201ENST00000589904 676 ntBASIC19.76■□□□□ 0.75
USP41Q3LFD5 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.76■□□□□ 0.75
USP41Q3LFD5 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP41Q3LFD5 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
USP41Q3LFD5 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
USP41Q3LFD5 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.76■□□□□ 0.75
USP41Q3LFD5 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP41Q3LFD5 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP41Q3LFD5 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP41Q3LFD5 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP41Q3LFD5 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
USP41Q3LFD5 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP41Q3LFD5 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP41Q3LFD5 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
USP41Q3LFD5 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP41Q3LFD5 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.75■□□□□ 0.75
USP41Q3LFD5 BX323043.1-201ENST00000641006 1765 ntBASIC19.75■□□□□ 0.75
USP41Q3LFD5 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.75■□□□□ 0.75
USP41Q3LFD5 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP41Q3LFD5 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.75■□□□□ 0.75
USP41Q3LFD5 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.75■□□□□ 0.75
USP41Q3LFD5 AC009065.1-201ENST00000564055 1225 ntBASIC19.75■□□□□ 0.75
USP41Q3LFD5 AC111152.3-201ENST00000569699 673 ntBASIC19.75■□□□□ 0.75
USP41Q3LFD5 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP41Q3LFD5 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP41Q3LFD5 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP41Q3LFD5 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP41Q3LFD5 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms