Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
FOXC1Q12948 AC034236.2-201ENST00000606662 1610 ntBASIC17.54■□□□□ 0.4
FOXC1Q12948 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXC1Q12948 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
FOXC1Q12948 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXC1Q12948 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXC1Q12948 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXC1Q12948 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXC1Q12948 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXC1Q12948 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.53■□□□□ 0.4
FOXC1Q12948 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.53■□□□□ 0.4
FOXC1Q12948 AC006333.2-201ENST00000607957 2099 ntBASIC17.53■□□□□ 0.4
FOXC1Q12948 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXC1Q12948 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXC1Q12948 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.53■□□□□ 0.4
FOXC1Q12948 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
FOXC1Q12948 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXC1Q12948 MIR770-201ENST00000390219 98 ntBASIC17.53■□□□□ 0.4
FOXC1Q12948 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.53■□□□□ 0.4
FOXC1Q12948 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
FOXC1Q12948 COX20P2-201ENST00000452636 358 ntBASIC17.53■□□□□ 0.4
FOXC1Q12948 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXC1Q12948 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.53■□□□□ 0.4
FOXC1Q12948 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.53■□□□□ 0.4
FOXC1Q12948 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.53■□□□□ 0.4
FOXC1Q12948 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.53■□□□□ 0.4
FOXC1Q12948 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.53■□□□□ 0.4
FOXC1Q12948 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.53■□□□□ 0.4
FOXC1Q12948 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.53■□□□□ 0.4
FOXC1Q12948 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.53■□□□□ 0.4
FOXC1Q12948 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.53■□□□□ 0.4
FOXC1Q12948 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXC1Q12948 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.52■□□□□ 0.4
FOXC1Q12948 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXC1Q12948 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXC1Q12948 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.52■□□□□ 0.4
FOXC1Q12948 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
FOXC1Q12948 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
FOXC1Q12948 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.52■□□□□ 0.4
FOXC1Q12948 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.52■□□□□ 0.4
FOXC1Q12948 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.52■□□□□ 0.4
FOXC1Q12948 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
FOXC1Q12948 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.52■□□□□ 0.4
FOXC1Q12948 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.52■□□□□ 0.4
FOXC1Q12948 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.52■□□□□ 0.4
FOXC1Q12948 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.52■□□□□ 0.4
FOXC1Q12948 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.52■□□□□ 0.4
FOXC1Q12948 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
FOXC1Q12948 AC008735.5-201ENST00000623544 497 ntBASIC17.52■□□□□ 0.4
FOXC1Q12948 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
FOXC1Q12948 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXC1Q12948 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXC1Q12948 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXC1Q12948 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
FOXC1Q12948 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
FOXC1Q12948 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
FOXC1Q12948 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
FOXC1Q12948 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
FOXC1Q12948 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
FOXC1Q12948 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
FOXC1Q12948 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
FOXC1Q12948 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
FOXC1Q12948 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC17.52■□□□□ 0.39
FOXC1Q12948 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.52■□□□□ 0.39
FOXC1Q12948 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXC1Q12948 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
FOXC1Q12948 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXC1Q12948 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.51■□□□□ 0.39
FOXC1Q12948 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
FOXC1Q12948 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
FOXC1Q12948 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXC1Q12948 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC17.51■□□□□ 0.39
FOXC1Q12948 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXC1Q12948 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
FOXC1Q12948 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXC1Q12948 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXC1Q12948 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXC1Q12948 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.51■□□□□ 0.39
FOXC1Q12948 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXC1Q12948 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
FOXC1Q12948 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
FOXC1Q12948 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXC1Q12948 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXC1Q12948 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.51■□□□□ 0.39
FOXC1Q12948 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.51■□□□□ 0.39
FOXC1Q12948 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.51■□□□□ 0.39
FOXC1Q12948 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
FOXC1Q12948 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.51■□□□□ 0.39
FOXC1Q12948 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.51■□□□□ 0.39
FOXC1Q12948 AC112777.1-201ENST00000540175 1423 ntBASIC17.51■□□□□ 0.39
FOXC1Q12948 AC105339.3-201ENST00000560043 636 ntBASIC17.51■□□□□ 0.39
FOXC1Q12948 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.51■□□□□ 0.39
FOXC1Q12948 AP005117.1-201ENST00000584346 1413 ntBASIC17.51■□□□□ 0.39
FOXC1Q12948 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
FOXC1Q12948 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.51■□□□□ 0.39
FOXC1Q12948 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FOXC1Q12948 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
FOXC1Q12948 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.51■□□□□ 0.39
FOXC1Q12948 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
FOXC1Q12948 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms