Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16■□□□□ 0.15
ABCA4P78363 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
ABCA4P78363 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
ABCA4P78363 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
ABCA4P78363 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
ABCA4P78363 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ABCA4P78363 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16■□□□□ 0.15
ABCA4P78363 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16■□□□□ 0.15
ABCA4P78363 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16■□□□□ 0.15
ABCA4P78363 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16■□□□□ 0.15
ABCA4P78363 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
ABCA4P78363 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
ABCA4P78363 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC16■□□□□ 0.15
ABCA4P78363 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16■□□□□ 0.15
ABCA4P78363 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
ABCA4P78363 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC16■□□□□ 0.15
ABCA4P78363 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ABCA4P78363 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA4P78363 BAALC-202ENST00000306391 243 ntTSL 5 BASIC15.99■□□□□ 0.15
ABCA4P78363 BAALC-204ENST00000330955 222 ntTSL 5 BASIC15.99■□□□□ 0.15
ABCA4P78363 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA4P78363 LINC00265-3P-201ENST00000447588 903 ntBASIC15.99■□□□□ 0.15
ABCA4P78363 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC15.99■□□□□ 0.15
ABCA4P78363 AC091607.1-201ENST00000490318 1060 ntBASIC15.99■□□□□ 0.15
ABCA4P78363 AC104819.1-201ENST00000504587 486 ntBASIC15.99■□□□□ 0.15
ABCA4P78363 KRT18P58-201ENST00000527480 1120 ntBASIC15.99■□□□□ 0.15
ABCA4P78363 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.99■□□□□ 0.15
ABCA4P78363 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC15.99■□□□□ 0.15
ABCA4P78363 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC15.99■□□□□ 0.15
ABCA4P78363 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA4P78363 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA4P78363 AF228730.7-201ENST00000641842 219 ntBASIC15.99■□□□□ 0.15
ABCA4P78363 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA4P78363 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA4P78363 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA4P78363 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA4P78363 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA4P78363 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
ABCA4P78363 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC15.99■□□□□ 0.15
ABCA4P78363 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA4P78363 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA4P78363 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA4P78363 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
ABCA4P78363 AC010240.3-201ENST00000607688 395 ntBASIC15.99■□□□□ 0.15
ABCA4P78363 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA4P78363 AC034236.2-201ENST00000606662 1610 ntBASIC15.99■□□□□ 0.15
ABCA4P78363 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC15.99■□□□□ 0.15
ABCA4P78363 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA4P78363 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
ABCA4P78363 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
ABCA4P78363 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC15.99■□□□□ 0.15
ABCA4P78363 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA4P78363 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.98■□□□□ 0.15
ABCA4P78363 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.98■□□□□ 0.15
ABCA4P78363 RNA5SP419-201ENST00000515908 135 ntBASIC15.98■□□□□ 0.15
ABCA4P78363 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC15.98■□□□□ 0.15
ABCA4P78363 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC15.98■□□□□ 0.15
ABCA4P78363 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA4P78363 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA4P78363 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC15.98■□□□□ 0.15
ABCA4P78363 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA4P78363 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC15.98■□□□□ 0.15
ABCA4P78363 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC15.98■□□□□ 0.15
ABCA4P78363 UBC-206ENST00000538617 1303 ntTSL 5 BASIC15.98■□□□□ 0.15
ABCA4P78363 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA4P78363 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA4P78363 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA4P78363 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
ABCA4P78363 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
ABCA4P78363 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC15.98■□□□□ 0.15
ABCA4P78363 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA4P78363 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC15.98■□□□□ 0.15
ABCA4P78363 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC15.98■□□□□ 0.15
ABCA4P78363 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA4P78363 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA4P78363 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA4P78363 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
ABCA4P78363 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
ABCA4P78363 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA4P78363 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC15.97■□□□□ 0.15
ABCA4P78363 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA4P78363 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC15.97■□□□□ 0.15
ABCA4P78363 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC15.97■□□□□ 0.15
ABCA4P78363 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC15.97■□□□□ 0.15
ABCA4P78363 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC15.97■□□□□ 0.15
ABCA4P78363 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC15.97■□□□□ 0.15
ABCA4P78363 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA4P78363 KATNBL1P6-202ENST00000562413 1466 ntBASIC15.97■□□□□ 0.15
ABCA4P78363 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA4P78363 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA4P78363 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA4P78363 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA4P78363 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA4P78363 AL032819.2-201ENST00000624543 2162 ntBASIC15.97■□□□□ 0.15
ABCA4P78363 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC15.97■□□□□ 0.15
ABCA4P78363 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC15.97■□□□□ 0.15
ABCA4P78363 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA4P78363 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ABCA4P78363 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC15.97■□□□□ 0.15
ABCA4P78363 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms