Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.43■□□□□ 0.7
HDAC4P56524 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC4P56524 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
HDAC4P56524 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
HDAC4P56524 AC009113.1-201ENST00000570267 2443 ntBASIC19.43■□□□□ 0.7
HDAC4P56524 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC4P56524 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HDAC4P56524 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.43■□□□□ 0.7
HDAC4P56524 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HDAC4P56524 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC4P56524 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC4P56524 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC4P56524 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC4P56524 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.42■□□□□ 0.7
HDAC4P56524 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.42■□□□□ 0.7
HDAC4P56524 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC4P56524 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC4P56524 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC4P56524 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC4P56524 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC4P56524 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.42■□□□□ 0.7
HDAC4P56524 KRT18P41-201ENST00000518924 1277 ntBASIC19.42■□□□□ 0.7
HDAC4P56524 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.42■□□□□ 0.7
HDAC4P56524 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
HDAC4P56524 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.42■□□□□ 0.7
HDAC4P56524 WWOX-216ENST00000569818 525 ntBASIC19.42■□□□□ 0.7
HDAC4P56524 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC4P56524 AC145285.6-201ENST00000604632 637 ntBASIC19.42■□□□□ 0.7
HDAC4P56524 AC073912.3-201ENST00000624414 853 ntBASIC19.42■□□□□ 0.7
HDAC4P56524 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.42■□□□□ 0.7
HDAC4P56524 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC4P56524 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
HDAC4P56524 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.42■□□□□ 0.7
HDAC4P56524 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
HDAC4P56524 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC4P56524 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HDAC4P56524 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.42■□□□□ 0.7
HDAC4P56524 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC4P56524 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC4P56524 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.42■□□□□ 0.7
HDAC4P56524 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HDAC4P56524 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.41■□□□□ 0.7
HDAC4P56524 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.41■□□□□ 0.7
HDAC4P56524 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.41■□□□□ 0.7
HDAC4P56524 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
HDAC4P56524 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.41■□□□□ 0.7
HDAC4P56524 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.41■□□□□ 0.7
HDAC4P56524 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.41■□□□□ 0.7
HDAC4P56524 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.41■□□□□ 0.7
HDAC4P56524 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.41■□□□□ 0.7
HDAC4P56524 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.41■□□□□ 0.7
HDAC4P56524 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.41■□□□□ 0.7
HDAC4P56524 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.41■□□□□ 0.7
HDAC4P56524 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
HDAC4P56524 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HDAC4P56524 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.41■□□□□ 0.7
HDAC4P56524 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC4P56524 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
HDAC4P56524 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC4P56524 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC4P56524 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.4■□□□□ 0.7
HDAC4P56524 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.4■□□□□ 0.7
HDAC4P56524 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.4■□□□□ 0.7
HDAC4P56524 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC4P56524 AC026471.1-201ENST00000564629 3026 ntBASIC19.4■□□□□ 0.7
HDAC4P56524 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC4P56524 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.4■□□□□ 0.7
HDAC4P56524 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC4P56524 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC4P56524 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC4P56524 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.4■□□□□ 0.7
HDAC4P56524 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.4■□□□□ 0.7
HDAC4P56524 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.4■□□□□ 0.7
HDAC4P56524 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.4■□□□□ 0.7
HDAC4P56524 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.4■□□□□ 0.7
HDAC4P56524 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
HDAC4P56524 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC4P56524 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC4P56524 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
HDAC4P56524 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC4P56524 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HDAC4P56524 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms