Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.19■□□□□ 0.66
NEK3P51956 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.19■□□□□ 0.66
NEK3P51956 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
NEK3P51956 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
NEK3P51956 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.19■□□□□ 0.66
NEK3P51956 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NEK3P51956 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.19■□□□□ 0.66
NEK3P51956 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.19■□□□□ 0.66
NEK3P51956 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NEK3P51956 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NEK3P51956 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.19■□□□□ 0.66
NEK3P51956 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NEK3P51956 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
NEK3P51956 IRX1P1-201ENST00000438849 1838 ntBASIC19.18■□□□□ 0.66
NEK3P51956 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
NEK3P51956 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
NEK3P51956 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NEK3P51956 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.18■□□□□ 0.66
NEK3P51956 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
NEK3P51956 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NEK3P51956 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NEK3P51956 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NEK3P51956 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.18■□□□□ 0.66
NEK3P51956 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NEK3P51956 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.18■□□□□ 0.66
NEK3P51956 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.18■□□□□ 0.66
NEK3P51956 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.18■□□□□ 0.66
NEK3P51956 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.18■□□□□ 0.66
NEK3P51956 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NEK3P51956 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NEK3P51956 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
NEK3P51956 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NEK3P51956 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NEK3P51956 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.18■□□□□ 0.66
NEK3P51956 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NEK3P51956 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NEK3P51956 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NEK3P51956 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.18■□□□□ 0.66
NEK3P51956 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
NEK3P51956 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NEK3P51956 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
NEK3P51956 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
NEK3P51956 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.17■□□□□ 0.66
NEK3P51956 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NEK3P51956 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NEK3P51956 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
NEK3P51956 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
NEK3P51956 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NEK3P51956 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.17■□□□□ 0.66
NEK3P51956 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
NEK3P51956 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.17■□□□□ 0.66
NEK3P51956 TSPY23P-201ENST00000440136 739 ntBASIC19.17■□□□□ 0.66
NEK3P51956 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.17■□□□□ 0.66
NEK3P51956 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NEK3P51956 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.17■□□□□ 0.66
NEK3P51956 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.17■□□□□ 0.66
NEK3P51956 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NEK3P51956 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NEK3P51956 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NEK3P51956 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NEK3P51956 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.17■□□□□ 0.66
NEK3P51956 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NEK3P51956 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.17■□□□□ 0.66
NEK3P51956 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NEK3P51956 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
NEK3P51956 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
NEK3P51956 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.16■□□□□ 0.66
NEK3P51956 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NEK3P51956 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
NEK3P51956 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NEK3P51956 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.16■□□□□ 0.66
NEK3P51956 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.16■□□□□ 0.66
NEK3P51956 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
NEK3P51956 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.16■□□□□ 0.66
NEK3P51956 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.16■□□□□ 0.66
NEK3P51956 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NEK3P51956 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.16■□□□□ 0.66
NEK3P51956 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.16■□□□□ 0.66
NEK3P51956 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.16■□□□□ 0.66
NEK3P51956 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.16■□□□□ 0.66
NEK3P51956 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NEK3P51956 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.16■□□□□ 0.66
NEK3P51956 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
NEK3P51956 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.16■□□□□ 0.66
NEK3P51956 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.16■□□□□ 0.66
NEK3P51956 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
NEK3P51956 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
NEK3P51956 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NEK3P51956 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
NEK3P51956 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NEK3P51956 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NEK3P51956 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NEK3P51956 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
NEK3P51956 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.15■□□□□ 0.66
NEK3P51956 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
NEK3P51956 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NEK3P51956 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
NEK3P51956 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
NEK3P51956 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NEK3P51956 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms