Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
MSX1P28360 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
MSX1P28360 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.04■□□□□ 0.32
MSX1P28360 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
MSX1P28360 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
MSX1P28360 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
MSX1P28360 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.04■□□□□ 0.32
MSX1P28360 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSX1P28360 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.04■□□□□ 0.32
MSX1P28360 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
MSX1P28360 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSX1P28360 TSPY5P-201ENST00000426936 936 ntBASIC17.04■□□□□ 0.32
MSX1P28360 AC092647.4-201ENST00000457211 535 ntBASIC17.04■□□□□ 0.32
MSX1P28360 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.04■□□□□ 0.32
MSX1P28360 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
MSX1P28360 COX11P1-201ENST00000489116 835 ntBASIC17.04■□□□□ 0.32
MSX1P28360 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.04■□□□□ 0.32
MSX1P28360 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSX1P28360 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.04■□□□□ 0.32
MSX1P28360 MIR4674-201ENST00000582457 87 ntBASIC17.04■□□□□ 0.32
MSX1P28360 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.04■□□□□ 0.32
MSX1P28360 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.04■□□□□ 0.32
MSX1P28360 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSX1P28360 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.04■□□□□ 0.32
MSX1P28360 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.04■□□□□ 0.32
MSX1P28360 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.04■□□□□ 0.32
MSX1P28360 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.04■□□□□ 0.32
MSX1P28360 AC008556.1-201ENST00000610908 2040 ntBASIC17.04■□□□□ 0.32
MSX1P28360 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSX1P28360 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSX1P28360 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSX1P28360 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
MSX1P28360 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
MSX1P28360 KRT8P7-201ENST00000533003 1432 ntBASIC17.04■□□□□ 0.32
MSX1P28360 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX1P28360 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSX1P28360 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX1P28360 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSX1P28360 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.03■□□□□ 0.32
MSX1P28360 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSX1P28360 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX1P28360 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
MSX1P28360 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX1P28360 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSX1P28360 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX1P28360 MTMR9LP-203ENST00000426597 1545 ntBASIC17.03■□□□□ 0.32
MSX1P28360 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX1P28360 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX1P28360 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSX1P28360 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
MSX1P28360 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
MSX1P28360 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.03■□□□□ 0.32
MSX1P28360 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.03■□□□□ 0.32
MSX1P28360 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
MSX1P28360 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.03■□□□□ 0.32
MSX1P28360 CR769767.2-201ENST00000622735 460 ntBASIC17.03■□□□□ 0.32
MSX1P28360 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.03■□□□□ 0.32
MSX1P28360 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.03■□□□□ 0.32
MSX1P28360 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.03■□□□□ 0.32
MSX1P28360 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
MSX1P28360 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX1P28360 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
MSX1P28360 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.03■□□□□ 0.32
MSX1P28360 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSX1P28360 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSX1P28360 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.02■□□□□ 0.32
MSX1P28360 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.02■□□□□ 0.32
MSX1P28360 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.02■□□□□ 0.32
MSX1P28360 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSX1P28360 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSX1P28360 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.02■□□□□ 0.32
MSX1P28360 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
MSX1P28360 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSX1P28360 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSX1P28360 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSX1P28360 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSX1P28360 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.02■□□□□ 0.32
MSX1P28360 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSX1P28360 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSX1P28360 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.02■□□□□ 0.32
MSX1P28360 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.02■□□□□ 0.32
MSX1P28360 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.02■□□□□ 0.32
MSX1P28360 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSX1P28360 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.02■□□□□ 0.32
MSX1P28360 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.02■□□□□ 0.32
MSX1P28360 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.02■□□□□ 0.31
MSX1P28360 AL357033.4-201ENST00000617703 1807 ntBASIC17.02■□□□□ 0.31
MSX1P28360 AC034236.2-201ENST00000606662 1610 ntBASIC17.02■□□□□ 0.31
MSX1P28360 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MSX1P28360 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MSX1P28360 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
MSX1P28360 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.02■□□□□ 0.31
MSX1P28360 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
MSX1P28360 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
MSX1P28360 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX1P28360 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX1P28360 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.01■□□□□ 0.31
MSX1P28360 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.01■□□□□ 0.31
MSX1P28360 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
MSX1P28360 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms