Protein–RNA interactions for Protein: O95832

CLDN1, Claudin-1, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1O95832 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLDN1O95832 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CLDN1O95832 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLDN1O95832 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLDN1O95832 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC16.61■□□□□ 0.25
CLDN1O95832 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLDN1O95832 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLDN1O95832 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLDN1O95832 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLDN1O95832 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLDN1O95832 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLDN1O95832 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLDN1O95832 SMG8-203ENST00000578922 2178 ntBASIC16.6■□□□□ 0.25
CLDN1O95832 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLDN1O95832 AKR1C7P-201ENST00000305623 895 ntBASIC16.6■□□□□ 0.25
CLDN1O95832 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
CLDN1O95832 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.6■□□□□ 0.25
CLDN1O95832 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLDN1O95832 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.6■□□□□ 0.25
CLDN1O95832 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CLDN1O95832 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.6■□□□□ 0.25
CLDN1O95832 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.6■□□□□ 0.25
CLDN1O95832 RNF126P1-202ENST00000569893 925 ntBASIC16.6■□□□□ 0.25
CLDN1O95832 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.6■□□□□ 0.25
CLDN1O95832 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLDN1O95832 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLDN1O95832 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLDN1O95832 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLDN1O95832 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLDN1O95832 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLDN1O95832 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CLDN1O95832 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLDN1O95832 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
CLDN1O95832 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLDN1O95832 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLDN1O95832 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLDN1O95832 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC16.59■□□□□ 0.25
CLDN1O95832 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC16.59■□□□□ 0.25
CLDN1O95832 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLDN1O95832 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLDN1O95832 TCF3P1-201ENST00000423021 1937 ntBASIC16.59■□□□□ 0.25
CLDN1O95832 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC16.59■□□□□ 0.25
CLDN1O95832 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLDN1O95832 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC16.59■□□□□ 0.25
CLDN1O95832 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLDN1O95832 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLDN1O95832 MIR662-201ENST00000384847 95 ntBASIC16.59■□□□□ 0.25
CLDN1O95832 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.59■□□□□ 0.25
CLDN1O95832 HMGN1P19-201ENST00000436976 333 ntBASIC16.59■□□□□ 0.25
CLDN1O95832 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.59■□□□□ 0.25
CLDN1O95832 RNA5SP419-201ENST00000515908 135 ntBASIC16.59■□□□□ 0.25
CLDN1O95832 KRT18P58-201ENST00000527480 1120 ntBASIC16.59■□□□□ 0.25
CLDN1O95832 AC074051.2-201ENST00000565115 352 ntBASIC16.59■□□□□ 0.25
CLDN1O95832 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC16.59■□□□□ 0.25
CLDN1O95832 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC16.59■□□□□ 0.25
CLDN1O95832 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
CLDN1O95832 LINC02084-201ENST00000606069 1096 ntBASIC16.59■□□□□ 0.25
CLDN1O95832 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.59■□□□□ 0.25
CLDN1O95832 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.59■□□□□ 0.25
CLDN1O95832 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC16.59■□□□□ 0.25
CLDN1O95832 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC16.59■□□□□ 0.25
CLDN1O95832 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLDN1O95832 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLDN1O95832 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC16.59■□□□□ 0.25
CLDN1O95832 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLDN1O95832 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLDN1O95832 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLDN1O95832 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CLDN1O95832 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLDN1O95832 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.59■□□□□ 0.25
CLDN1O95832 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CLDN1O95832 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.25
CLDN1O95832 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC16.58■□□□□ 0.25
CLDN1O95832 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CLDN1O95832 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CLDN1O95832 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLDN1O95832 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLDN1O95832 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CLDN1O95832 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
CLDN1O95832 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC16.58■□□□□ 0.24
CLDN1O95832 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.58■□□□□ 0.24
CLDN1O95832 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CLDN1O95832 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.58■□□□□ 0.24
CLDN1O95832 AP001005.1-201ENST00000571755 1248 ntBASIC16.58■□□□□ 0.24
CLDN1O95832 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.58■□□□□ 0.24
CLDN1O95832 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CLDN1O95832 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.24
CLDN1O95832 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CLDN1O95832 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLDN1O95832 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLDN1O95832 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC16.58■□□□□ 0.24
CLDN1O95832 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLDN1O95832 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLDN1O95832 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC16.58■□□□□ 0.24
CLDN1O95832 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC16.58■□□□□ 0.24
CLDN1O95832 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLDN1O95832 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLDN1O95832 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CLDN1O95832 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CLDN1O95832 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms