Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
NKX2-2O95096 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
NKX2-2O95096 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
NKX2-2O95096 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-2O95096 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-2O95096 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-2O95096 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.17■□□□□ 0.34
NKX2-2O95096 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-2O95096 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-2O95096 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-2O95096 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-2O95096 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-2O95096 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-2O95096 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-2O95096 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-2O95096 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-2O95096 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-2O95096 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.17■□□□□ 0.34
NKX2-2O95096 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.17■□□□□ 0.34
NKX2-2O95096 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-2O95096 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.17■□□□□ 0.34
NKX2-2O95096 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.17■□□□□ 0.34
NKX2-2O95096 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.17■□□□□ 0.34
NKX2-2O95096 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-2O95096 AC145285.6-201ENST00000604632 637 ntBASIC17.17■□□□□ 0.34
NKX2-2O95096 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.17■□□□□ 0.34
NKX2-2O95096 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.17■□□□□ 0.34
NKX2-2O95096 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-2O95096 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.17■□□□□ 0.34
NKX2-2O95096 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.17■□□□□ 0.34
NKX2-2O95096 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
NKX2-2O95096 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NKX2-2O95096 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.16■□□□□ 0.34
NKX2-2O95096 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
NKX2-2O95096 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.16■□□□□ 0.34
NKX2-2O95096 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.16■□□□□ 0.34
NKX2-2O95096 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX2-2O95096 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
NKX2-2O95096 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.16■□□□□ 0.34
NKX2-2O95096 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
NKX2-2O95096 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.16■□□□□ 0.34
NKX2-2O95096 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX2-2O95096 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX2-2O95096 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
NKX2-2O95096 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX2-2O95096 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX2-2O95096 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.16■□□□□ 0.34
NKX2-2O95096 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.16■□□□□ 0.34
NKX2-2O95096 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX2-2O95096 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.16■□□□□ 0.34
NKX2-2O95096 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.16■□□□□ 0.34
NKX2-2O95096 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.16■□□□□ 0.34
NKX2-2O95096 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.16■□□□□ 0.34
NKX2-2O95096 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.16■□□□□ 0.34
NKX2-2O95096 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
NKX2-2O95096 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.16■□□□□ 0.34
NKX2-2O95096 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX2-2O95096 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX2-2O95096 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.16■□□□□ 0.34
NKX2-2O95096 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.16■□□□□ 0.34
NKX2-2O95096 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX2-2O95096 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.16■□□□□ 0.34
NKX2-2O95096 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.16■□□□□ 0.34
NKX2-2O95096 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.16■□□□□ 0.34
NKX2-2O95096 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX2-2O95096 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX2-2O95096 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
NKX2-2O95096 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.15■□□□□ 0.34
NKX2-2O95096 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
NKX2-2O95096 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NKX2-2O95096 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.15■□□□□ 0.34
NKX2-2O95096 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.15■□□□□ 0.34
NKX2-2O95096 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NKX2-2O95096 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NKX2-2O95096 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
NKX2-2O95096 BICD1-207ENST00000551848 1962 ntBASIC17.15■□□□□ 0.34
NKX2-2O95096 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.15■□□□□ 0.34
NKX2-2O95096 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NKX2-2O95096 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.15■□□□□ 0.34
NKX2-2O95096 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NKX2-2O95096 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NKX2-2O95096 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
NKX2-2O95096 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.15■□□□□ 0.34
NKX2-2O95096 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.15■□□□□ 0.34
NKX2-2O95096 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
NKX2-2O95096 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
NKX2-2O95096 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.15■□□□□ 0.34
NKX2-2O95096 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.15■□□□□ 0.34
NKX2-2O95096 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.15■□□□□ 0.34
NKX2-2O95096 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.15■□□□□ 0.34
NKX2-2O95096 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.15■□□□□ 0.34
NKX2-2O95096 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.15■□□□□ 0.34
NKX2-2O95096 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.15■□□□□ 0.34
NKX2-2O95096 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.15■□□□□ 0.34
NKX2-2O95096 AC073912.3-201ENST00000624414 853 ntBASIC17.15■□□□□ 0.34
NKX2-2O95096 AC112497.1-201ENST00000624824 639 ntBASIC17.15■□□□□ 0.34
NKX2-2O95096 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NKX2-2O95096 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.15■□□□□ 0.34
NKX2-2O95096 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NKX2-2O95096 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms