Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SHOX2O60902 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SHOX2O60902 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHOX2O60902 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.65■□□□□ 0.58
SHOX2O60902 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.65■□□□□ 0.58
SHOX2O60902 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHOX2O60902 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SHOX2O60902 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHOX2O60902 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.65■□□□□ 0.58
SHOX2O60902 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.65■□□□□ 0.58
SHOX2O60902 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SHOX2O60902 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHOX2O60902 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHOX2O60902 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SHOX2O60902 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.65■□□□□ 0.58
SHOX2O60902 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.65■□□□□ 0.58
SHOX2O60902 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.65■□□□□ 0.58
SHOX2O60902 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.65■□□□□ 0.58
SHOX2O60902 KRT18P61-201ENST00000585825 1298 ntBASIC18.65■□□□□ 0.58
SHOX2O60902 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHOX2O60902 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.65■□□□□ 0.58
SHOX2O60902 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.65■□□□□ 0.58
SHOX2O60902 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.65■□□□□ 0.58
SHOX2O60902 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHOX2O60902 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHOX2O60902 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHOX2O60902 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHOX2O60902 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHOX2O60902 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHOX2O60902 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.65■□□□□ 0.58
SHOX2O60902 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHOX2O60902 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.65■□□□□ 0.58
SHOX2O60902 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SHOX2O60902 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SHOX2O60902 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
SHOX2O60902 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SHOX2O60902 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.64■□□□□ 0.58
SHOX2O60902 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
SHOX2O60902 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SHOX2O60902 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SHOX2O60902 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.64■□□□□ 0.58
SHOX2O60902 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SHOX2O60902 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.64■□□□□ 0.58
SHOX2O60902 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SHOX2O60902 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHOX2O60902 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHOX2O60902 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC18.64■□□□□ 0.57
SHOX2O60902 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHOX2O60902 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SHOX2O60902 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.64■□□□□ 0.57
SHOX2O60902 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHOX2O60902 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
SHOX2O60902 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHOX2O60902 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHOX2O60902 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
SHOX2O60902 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.64■□□□□ 0.57
SHOX2O60902 AC068587.9-201ENST00000641814 219 ntBASIC18.64■□□□□ 0.57
SHOX2O60902 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
SHOX2O60902 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SHOX2O60902 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
SHOX2O60902 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHOX2O60902 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SHOX2O60902 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHOX2O60902 DOC2GP-204ENST00000639052 2548 ntBASIC18.64■□□□□ 0.57
SHOX2O60902 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.64■□□□□ 0.57
SHOX2O60902 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHOX2O60902 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHOX2O60902 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SHOX2O60902 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SHOX2O60902 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SHOX2O60902 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SHOX2O60902 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHOX2O60902 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHOX2O60902 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SHOX2O60902 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SHOX2O60902 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
SHOX2O60902 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.63■□□□□ 0.57
SHOX2O60902 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.63■□□□□ 0.57
SHOX2O60902 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.63■□□□□ 0.57
SHOX2O60902 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHOX2O60902 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.63■□□□□ 0.57
SHOX2O60902 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHOX2O60902 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHOX2O60902 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SHOX2O60902 TSPY21P-201ENST00000433481 731 ntBASIC18.63■□□□□ 0.57
SHOX2O60902 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.63■□□□□ 0.57
SHOX2O60902 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.63■□□□□ 0.57
SHOX2O60902 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.63■□□□□ 0.57
SHOX2O60902 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC18.63■□□□□ 0.57
SHOX2O60902 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.63■□□□□ 0.57
SHOX2O60902 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SHOX2O60902 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SHOX2O60902 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
SHOX2O60902 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHOX2O60902 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SHOX2O60902 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHOX2O60902 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHOX2O60902 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SHOX2O60902 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.63■□□□□ 0.57
SHOX2O60902 RCC2P6-201ENST00000526625 1557 ntBASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms