Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSX4O60224 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC16.89■□□□□ 0.29
SSX4O60224 AF186192.3-201ENST00000583427 947 ntBASIC16.89■□□□□ 0.29
SSX4O60224 AC010331.1-201ENST00000611423 582 ntBASIC16.89■□□□□ 0.29
SSX4O60224 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.89■□□□□ 0.29
SSX4O60224 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
SSX4O60224 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSX4O60224 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSX4O60224 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SSX4O60224 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSX4O60224 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSX4O60224 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSX4O60224 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSX4O60224 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
SSX4O60224 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
SSX4O60224 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SSX4O60224 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SSX4O60224 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSX4O60224 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC16.89■□□□□ 0.29
SSX4O60224 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC16.89■□□□□ 0.29
SSX4O60224 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSX4O60224 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SSX4O60224 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SSX4O60224 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SSX4O60224 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SSX4O60224 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.88■□□□□ 0.29
SSX4O60224 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SSX4O60224 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SSX4O60224 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SSX4O60224 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SSX4O60224 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SSX4O60224 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SSX4O60224 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SSX4O60224 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SSX4O60224 F2R-202ENST00000505600 442 ntTSL 2 BASIC16.88■□□□□ 0.29
SSX4O60224 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC16.88■□□□□ 0.29
SSX4O60224 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SSX4O60224 MAX-217ENST00000557277 728 ntTSL 3 BASIC16.88■□□□□ 0.29
SSX4O60224 AP003071.4-201ENST00000562276 1284 ntBASIC16.88■□□□□ 0.29
SSX4O60224 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SSX4O60224 CD177P1-201ENST00000606252 935 ntBASIC16.88■□□□□ 0.29
SSX4O60224 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SSX4O60224 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
SSX4O60224 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SSX4O60224 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SSX4O60224 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SSX4O60224 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SSX4O60224 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC16.88■□□□□ 0.29
SSX4O60224 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.88■□□□□ 0.29
SSX4O60224 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.88■□□□□ 0.29
SSX4O60224 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.88■□□□□ 0.29
SSX4O60224 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.88■□□□□ 0.29
SSX4O60224 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.87■□□□□ 0.29
SSX4O60224 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SSX4O60224 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.87■□□□□ 0.29
SSX4O60224 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC16.87■□□□□ 0.29
SSX4O60224 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.87■□□□□ 0.29
SSX4O60224 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SSX4O60224 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.87■□□□□ 0.29
SSX4O60224 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
SSX4O60224 HLA-G-202ENST00000376815 851 ntBASIC16.87■□□□□ 0.29
SSX4O60224 HLA-G-203ENST00000376818 1127 ntBASIC16.87■□□□□ 0.29
SSX4O60224 FAM197Y1-201ENST00000421178 764 ntBASIC16.87■□□□□ 0.29
SSX4O60224 AL353807.1-201ENST00000427475 662 ntBASIC16.87■□□□□ 0.29
SSX4O60224 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
SSX4O60224 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC16.87■□□□□ 0.29
SSX4O60224 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC16.87■□□□□ 0.29
SSX4O60224 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
SSX4O60224 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.87■□□□□ 0.29
SSX4O60224 AC004264.1-201ENST00000608354 794 ntBASIC16.87■□□□□ 0.29
SSX4O60224 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC16.87■□□□□ 0.29
SSX4O60224 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
SSX4O60224 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
SSX4O60224 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
SSX4O60224 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.87■□□□□ 0.29
SSX4O60224 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.87■□□□□ 0.29
SSX4O60224 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
SSX4O60224 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SSX4O60224 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SSX4O60224 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms