Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC16.47■□□□□ 0.23
SGCEO43556 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SGCEO43556 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SGCEO43556 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC16.47■□□□□ 0.23
SGCEO43556 HEIH-201ENST00000623091 1652 ntBASIC16.47■□□□□ 0.23
SGCEO43556 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SGCEO43556 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SGCEO43556 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SGCEO43556 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SGCEO43556 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SGCEO43556 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SGCEO43556 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16.47■□□□□ 0.23
SGCEO43556 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
SGCEO43556 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SGCEO43556 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
SGCEO43556 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SGCEO43556 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.47■□□□□ 0.23
SGCEO43556 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.47■□□□□ 0.23
SGCEO43556 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.47■□□□□ 0.23
SGCEO43556 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC16.47■□□□□ 0.23
SGCEO43556 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.47■□□□□ 0.23
SGCEO43556 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC16.47■□□□□ 0.23
SGCEO43556 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SGCEO43556 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SGCEO43556 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SGCEO43556 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SGCEO43556 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SGCEO43556 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SGCEO43556 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.47■□□□□ 0.23
SGCEO43556 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.46■□□□□ 0.23
SGCEO43556 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SGCEO43556 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.46■□□□□ 0.23
SGCEO43556 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SGCEO43556 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SGCEO43556 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SGCEO43556 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SGCEO43556 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SGCEO43556 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
SGCEO43556 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SGCEO43556 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC16.46■□□□□ 0.23
SGCEO43556 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.46■□□□□ 0.23
SGCEO43556 CRYGFP-201ENST00000418459 633 ntBASIC16.46■□□□□ 0.23
SGCEO43556 TSPY7P-201ENST00000431358 1114 ntBASIC16.46■□□□□ 0.23
SGCEO43556 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC16.46■□□□□ 0.23
SGCEO43556 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.46■□□□□ 0.23
SGCEO43556 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.46■□□□□ 0.23
SGCEO43556 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SGCEO43556 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC16.46■□□□□ 0.23
SGCEO43556 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC16.46■□□□□ 0.23
SGCEO43556 COBL-210ENST00000632460 1941 ntTSL 5 BASIC16.46■□□□□ 0.23
SGCEO43556 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
SGCEO43556 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SGCEO43556 KRT8P32-201ENST00000512863 1461 ntBASIC16.46■□□□□ 0.23
SGCEO43556 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SGCEO43556 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.46■□□□□ 0.22
SGCEO43556 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
SGCEO43556 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SGCEO43556 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.46■□□□□ 0.22
SGCEO43556 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.46■□□□□ 0.22
SGCEO43556 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SGCEO43556 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
SGCEO43556 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SGCEO43556 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 UNC93B2-201ENST00000285383 730 ntBASIC16.45■□□□□ 0.22
SGCEO43556 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.45■□□□□ 0.22
SGCEO43556 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC16.45■□□□□ 0.22
SGCEO43556 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.45■□□□□ 0.22
SGCEO43556 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.45■□□□□ 0.22
SGCEO43556 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC16.45■□□□□ 0.22
SGCEO43556 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.45■□□□□ 0.22
SGCEO43556 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC16.45■□□□□ 0.22
SGCEO43556 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.45■□□□□ 0.22
SGCEO43556 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.45■□□□□ 0.22
SGCEO43556 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.45■□□□□ 0.22
SGCEO43556 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC16.45■□□□□ 0.22
SGCEO43556 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.45■□□□□ 0.22
SGCEO43556 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
SGCEO43556 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 ANO7L1-203ENST00000602586 1720 ntBASIC16.45■□□□□ 0.22
SGCEO43556 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SGCEO43556 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC16.45■□□□□ 0.22
SGCEO43556 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.44■□□□□ 0.22
SGCEO43556 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SGCEO43556 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms