Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SDCBPO00560 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SDCBPO00560 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
SDCBPO00560 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SDCBPO00560 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC15.86■□□□□ 0.13
SDCBPO00560 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
SDCBPO00560 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC15.86■□□□□ 0.13
SDCBPO00560 C1QL1P1-201ENST00000568105 661 ntBASIC15.86■□□□□ 0.13
SDCBPO00560 AC006058.3-201ENST00000606217 1069 ntBASIC15.86■□□□□ 0.13
SDCBPO00560 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SDCBPO00560 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
SDCBPO00560 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC15.86■□□□□ 0.13
SDCBPO00560 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
SDCBPO00560 AC073592.3-201ENST00000625118 1834 ntBASIC15.86■□□□□ 0.13
SDCBPO00560 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC15.86■□□□□ 0.13
SDCBPO00560 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SDCBPO00560 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC15.86■□□□□ 0.13
SDCBPO00560 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
SDCBPO00560 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
SDCBPO00560 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
SDCBPO00560 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC15.86■□□□□ 0.13
SDCBPO00560 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SDCBPO00560 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC15.86■□□□□ 0.13
SDCBPO00560 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SDCBPO00560 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
SDCBPO00560 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SDCBPO00560 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SDCBPO00560 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC15.85■□□□□ 0.13
SDCBPO00560 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
SDCBPO00560 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
SDCBPO00560 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC15.85■□□□□ 0.13
SDCBPO00560 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
SDCBPO00560 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC15.85■□□□□ 0.13
SDCBPO00560 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC15.85■□□□□ 0.13
SDCBPO00560 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC15.85■□□□□ 0.13
SDCBPO00560 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
SDCBPO00560 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC15.85■□□□□ 0.13
SDCBPO00560 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC15.85■□□□□ 0.13
SDCBPO00560 LY6E-205ENST00000519611 635 ntTSL 3 BASIC15.85■□□□□ 0.13
SDCBPO00560 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
SDCBPO00560 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC15.85■□□□□ 0.13
SDCBPO00560 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
SDCBPO00560 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
SDCBPO00560 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC15.85■□□□□ 0.13
SDCBPO00560 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
SDCBPO00560 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC15.85■□□□□ 0.13
SDCBPO00560 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC15.85■□□□□ 0.13
SDCBPO00560 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC15.85■□□□□ 0.13
SDCBPO00560 SNAI3-AS1-205ENST00000568633 2096 ntBASIC15.85■□□□□ 0.13
SDCBPO00560 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
SDCBPO00560 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC15.85■□□□□ 0.13
SDCBPO00560 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SDCBPO00560 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC15.84■□□□□ 0.13
SDCBPO00560 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
SDCBPO00560 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC15.84■□□□□ 0.13
SDCBPO00560 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC15.84■□□□□ 0.13
SDCBPO00560 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC15.84■□□□□ 0.13
SDCBPO00560 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC15.84■□□□□ 0.13
SDCBPO00560 ADM-205ENST00000528544 586 ntTSL 2 BASIC15.84■□□□□ 0.13
SDCBPO00560 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
SDCBPO00560 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC15.84■□□□□ 0.13
SDCBPO00560 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
SDCBPO00560 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SDCBPO00560 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC15.84■□□□□ 0.13
SDCBPO00560 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC15.84■□□□□ 0.13
SDCBPO00560 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
SDCBPO00560 GOLGA6L5P-202ENST00000515341 1828 ntBASIC15.84■□□□□ 0.13
SDCBPO00560 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms