Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 AC010240.3-201ENST00000607688 395 ntBASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 NDUFV2-AS1-203ENST00000608008 779 ntBASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 AC034236.2-201ENST00000606662 1610 ntBASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 KRT8P7-201ENST00000533003 1432 ntBASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV40A0A0B4J280 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 HOXB1-202ENST00000577092 1414 ntBASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
TRAV40A0A0B4J280 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV40A0A0B4J280 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms