Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 INGX-201ENST00000359239 846 ntBASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 WWOX-216ENST00000569818 525 ntBASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.25■□□□□ 0.51
PCDHB3Q9Y5E6 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 AC092338.2-201ENST00000568827 1415 ntBASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 AC007663.1-201ENST00000438948 1240 ntBASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 AL023803.3-201ENST00000615559 522 ntBASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 AC006011.2-201ENST00000621313 1158 ntBASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 FP475955.4-201ENST00000623131 1990 ntBASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCDHB3Q9Y5E6 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 PRSS44-201ENST00000515154 1146 ntBASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
PCDHB3Q9Y5E6 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms