Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX4Q9UIU6 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
SIX4Q9UIU6 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SIX4Q9UIU6 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.93■□□□□ 0.78
SIX4Q9UIU6 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX4Q9UIU6 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.93■□□□□ 0.78
SIX4Q9UIU6 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SIX4Q9UIU6 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SIX4Q9UIU6 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX4Q9UIU6 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX4Q9UIU6 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX4Q9UIU6 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX4Q9UIU6 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.93■□□□□ 0.78
SIX4Q9UIU6 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.93■□□□□ 0.78
SIX4Q9UIU6 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX4Q9UIU6 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.93■□□□□ 0.78
SIX4Q9UIU6 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.92■□□□□ 0.78
SIX4Q9UIU6 AC079602.3-201ENST00000623931 403 ntBASIC19.92■□□□□ 0.78
SIX4Q9UIU6 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
SIX4Q9UIU6 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 AP000593.1-201ENST00000393668 712 ntBASIC19.91■□□□□ 0.78
SIX4Q9UIU6 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 AL031133.1-201ENST00000406807 723 ntBASIC19.91■□□□□ 0.78
SIX4Q9UIU6 AC092597.1-201ENST00000487352 616 ntBASIC19.91■□□□□ 0.78
SIX4Q9UIU6 AC034232.1-201ENST00000506026 1064 ntBASIC19.91■□□□□ 0.78
SIX4Q9UIU6 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 AC112777.1-201ENST00000540175 1423 ntBASIC19.91■□□□□ 0.78
SIX4Q9UIU6 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 MYLKP1-201ENST00000509077 1580 ntBASIC19.91■□□□□ 0.78
SIX4Q9UIU6 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SIX4Q9UIU6 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 AC099343.3-201ENST00000605834 2503 ntBASIC19.9■□□□□ 0.78
SIX4Q9UIU6 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 AC112907.2-201ENST00000448639 330 ntBASIC19.9■□□□□ 0.78
SIX4Q9UIU6 LINC01238-205ENST00000567549 1107 ntBASIC19.9■□□□□ 0.78
SIX4Q9UIU6 MIR3180-4-201ENST00000582223 153 ntBASIC19.9■□□□□ 0.78
SIX4Q9UIU6 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 AC004408.2-201ENST00000623613 2777 ntBASIC19.9■□□□□ 0.78
SIX4Q9UIU6 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 AL163051.1-201ENST00000569214 1512 ntBASIC19.9■□□□□ 0.78
SIX4Q9UIU6 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX4Q9UIU6 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms