Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
DKK3Q9UBP4 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
DKK3Q9UBP4 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
DKK3Q9UBP4 AL031133.1-201ENST00000406807 723 ntBASIC18.72■□□□□ 0.59
DKK3Q9UBP4 RASA4DP-201ENST00000460726 1199 ntBASIC18.72■□□□□ 0.59
DKK3Q9UBP4 KRT18P41-201ENST00000518924 1277 ntBASIC18.72■□□□□ 0.59
DKK3Q9UBP4 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.72■□□□□ 0.59
DKK3Q9UBP4 MIR3180-4-201ENST00000582223 153 ntBASIC18.72■□□□□ 0.59
DKK3Q9UBP4 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
DKK3Q9UBP4 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.72■□□□□ 0.59
DKK3Q9UBP4 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
DKK3Q9UBP4 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.72■□□□□ 0.59
DKK3Q9UBP4 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.72■□□□□ 0.59
DKK3Q9UBP4 Z98044.1-201ENST00000632503 1764 ntBASIC18.72■□□□□ 0.59
DKK3Q9UBP4 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
DKK3Q9UBP4 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
DKK3Q9UBP4 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.72■□□□□ 0.59
DKK3Q9UBP4 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
DKK3Q9UBP4 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.72■□□□□ 0.59
DKK3Q9UBP4 AC006333.2-201ENST00000607957 2099 ntBASIC18.72■□□□□ 0.59
DKK3Q9UBP4 AL357033.4-201ENST00000617703 1807 ntBASIC18.72■□□□□ 0.59
DKK3Q9UBP4 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 SPDYE15P-201ENST00000424157 909 ntBASIC18.71■□□□□ 0.59
DKK3Q9UBP4 AL671277.2-201ENST00000458060 996 ntBASIC18.71■□□□□ 0.59
DKK3Q9UBP4 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DKK3Q9UBP4 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
DKK3Q9UBP4 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 MIR3917-201ENST00000580971 93 ntBASIC18.7■□□□□ 0.58
DKK3Q9UBP4 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 HYMAI.1-201ENST00000620949 238 ntBASIC18.7■□□□□ 0.58
DKK3Q9UBP4 AL121956.5-201ENST00000625261 221 ntBASIC18.7■□□□□ 0.58
DKK3Q9UBP4 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
DKK3Q9UBP4 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 AC112907.2-201ENST00000448639 330 ntBASIC18.69■□□□□ 0.58
DKK3Q9UBP4 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.69■□□□□ 0.58
DKK3Q9UBP4 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms