Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.34■■□□□ 1.01
USP28Q96RU2 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.34■■□□□ 1.01
USP28Q96RU2 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
USP28Q96RU2 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
USP28Q96RU2 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
USP28Q96RU2 AC096733.2-201ENST00000609937 1394 ntBASIC21.34■■□□□ 1.01
USP28Q96RU2 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
USP28Q96RU2 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
USP28Q96RU2 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
USP28Q96RU2 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
USP28Q96RU2 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
USP28Q96RU2 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
USP28Q96RU2 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
USP28Q96RU2 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
USP28Q96RU2 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC21.33■■□□□ 1.01
USP28Q96RU2 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
USP28Q96RU2 AC116562.2-201ENST00000507042 360 ntBASIC21.33■■□□□ 1.01
USP28Q96RU2 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
USP28Q96RU2 AC142381.4-202ENST00000563973 229 ntBASIC21.33■■□□□ 1.01
USP28Q96RU2 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC21.33■■□□□ 1.01
USP28Q96RU2 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC21.33■■□□□ 1.01
USP28Q96RU2 MYC-208ENST00000641036 567 ntBASIC21.33■■□□□ 1.01
USP28Q96RU2 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC21.33■■□□□ 1.01
USP28Q96RU2 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC21.33■■□□□ 1.01
USP28Q96RU2 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC21.33■■□□□ 1
USP28Q96RU2 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1
USP28Q96RU2 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC21.33■■□□□ 1
USP28Q96RU2 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1
USP28Q96RU2 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.33■■□□□ 1
USP28Q96RU2 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.33■■□□□ 1
USP28Q96RU2 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC21.33■■□□□ 1
USP28Q96RU2 AIRN-201ENST00000601203 4374 ntBASIC21.32■■□□□ 1
USP28Q96RU2 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
USP28Q96RU2 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
USP28Q96RU2 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC21.32■■□□□ 1
USP28Q96RU2 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC21.32■■□□□ 1
USP28Q96RU2 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
USP28Q96RU2 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.32■■□□□ 1
USP28Q96RU2 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC21.32■■□□□ 1
USP28Q96RU2 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21.32■■□□□ 1
USP28Q96RU2 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC21.32■■□□□ 1
USP28Q96RU2 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21.32■■□□□ 1
USP28Q96RU2 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC21.32■■□□□ 1
USP28Q96RU2 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
USP28Q96RU2 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC21.32■■□□□ 1
USP28Q96RU2 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.32■■□□□ 1
USP28Q96RU2 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
USP28Q96RU2 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
USP28Q96RU2 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC21.32■■□□□ 1
USP28Q96RU2 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC21.32■■□□□ 1
USP28Q96RU2 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
USP28Q96RU2 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.31■■□□□ 1
USP28Q96RU2 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
USP28Q96RU2 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
USP28Q96RU2 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP28Q96RU2 GPAT2P1-201ENST00000444924 1672 ntBASIC21.31■■□□□ 1
USP28Q96RU2 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
USP28Q96RU2 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
USP28Q96RU2 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
USP28Q96RU2 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
USP28Q96RU2 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP28Q96RU2 AL135905.2-201ENST00000584934 1404 ntBASIC21.31■■□□□ 1
USP28Q96RU2 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.31■■□□□ 1
USP28Q96RU2 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
USP28Q96RU2 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC21.31■■□□□ 1
USP28Q96RU2 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP28Q96RU2 ENSA-205ENST00000361532 792 ntTSL 2 BASIC21.31■■□□□ 1
USP28Q96RU2 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
USP28Q96RU2 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC21.31■■□□□ 1
USP28Q96RU2 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
USP28Q96RU2 AL023284.2-201ENST00000405850 579 ntBASIC21.31■■□□□ 1
USP28Q96RU2 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.31■■□□□ 1
USP28Q96RU2 NUDT16P1-203ENST00000513809 620 ntBASIC21.31■■□□□ 1
USP28Q96RU2 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.31■■□□□ 1
USP28Q96RU2 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.31■■□□□ 1
USP28Q96RU2 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
USP28Q96RU2 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
USP28Q96RU2 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
USP28Q96RU2 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
USP28Q96RU2 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
USP28Q96RU2 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP28Q96RU2 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.31■■□□□ 1
USP28Q96RU2 ESPNP-201ENST00000270691 2015 ntBASIC21.31■■□□□ 1
USP28Q96RU2 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
USP28Q96RU2 MYLKP1-201ENST00000509077 1580 ntBASIC21.31■■□□□ 1
USP28Q96RU2 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
USP28Q96RU2 AC067852.2-201ENST00000590513 2313 ntBASIC21.3■■□□□ 1
USP28Q96RU2 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
USP28Q96RU2 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
USP28Q96RU2 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC21.3■■□□□ 1
USP28Q96RU2 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
USP28Q96RU2 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21.3■■□□□ 1
USP28Q96RU2 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
USP28Q96RU2 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
USP28Q96RU2 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.3■■□□□ 1
USP28Q96RU2 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC21.3■■□□□ 1
USP28Q96RU2 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21.3■■□□□ 1
USP28Q96RU2 MFAP1P1-201ENST00000442257 1255 ntBASIC21.3■■□□□ 1
USP28Q96RU2 GCSHP5-201ENST00000443090 522 ntBASIC21.3■■□□□ 1
USP28Q96RU2 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms