Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS35Q96QK1 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS35Q96QK1 AC034236.2-201ENST00000606662 1610 ntBASIC18.5■□□□□ 0.55
VPS35Q96QK1 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS35Q96QK1 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
VPS35Q96QK1 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS35Q96QK1 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS35Q96QK1 COX11P1-201ENST00000489116 835 ntBASIC18.5■□□□□ 0.55
VPS35Q96QK1 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
VPS35Q96QK1 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS35Q96QK1 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.5■□□□□ 0.55
VPS35Q96QK1 AL031432.5-201ENST00000641059 760 ntBASIC18.5■□□□□ 0.55
VPS35Q96QK1 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS35Q96QK1 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS35Q96QK1 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS35Q96QK1 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
VPS35Q96QK1 Z98044.1-201ENST00000632503 1764 ntBASIC18.5■□□□□ 0.55
VPS35Q96QK1 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS35Q96QK1 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS35Q96QK1 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS35Q96QK1 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS35Q96QK1 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS35Q96QK1 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS35Q96QK1 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS35Q96QK1 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS35Q96QK1 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.49■□□□□ 0.55
VPS35Q96QK1 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS35Q96QK1 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS35Q96QK1 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 TMPOP1-202ENST00000424642 1267 ntBASIC18.49■□□□□ 0.55
VPS35Q96QK1 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 KRT18P21-201ENST00000515767 1272 ntBASIC18.49■□□□□ 0.55
VPS35Q96QK1 KRT18P41-201ENST00000518924 1277 ntBASIC18.49■□□□□ 0.55
VPS35Q96QK1 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 AC120498.9-201ENST00000339021 3867 ntBASIC18.49■□□□□ 0.55
VPS35Q96QK1 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS35Q96QK1 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS35Q96QK1 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS35Q96QK1 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
VPS35Q96QK1 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS35Q96QK1 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS35Q96QK1 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS35Q96QK1 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
VPS35Q96QK1 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS35Q96QK1 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
VPS35Q96QK1 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
VPS35Q96QK1 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS35Q96QK1 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.48■□□□□ 0.55
VPS35Q96QK1 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS35Q96QK1 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS35Q96QK1 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
VPS35Q96QK1 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.48■□□□□ 0.55
VPS35Q96QK1 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS35Q96QK1 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS35Q96QK1 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.48■□□□□ 0.55
VPS35Q96QK1 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.48■□□□□ 0.55
VPS35Q96QK1 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.48■□□□□ 0.55
VPS35Q96QK1 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS35Q96QK1 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS35Q96QK1 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS35Q96QK1 AP000974.1-201ENST00000623909 2387 ntBASIC18.48■□□□□ 0.55
VPS35Q96QK1 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS35Q96QK1 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
VPS35Q96QK1 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.48■□□□□ 0.55
VPS35Q96QK1 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS35Q96QK1 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.48■□□□□ 0.55
VPS35Q96QK1 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS35Q96QK1 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS35Q96QK1 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS35Q96QK1 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.48■□□□□ 0.55
VPS35Q96QK1 AC098818.2-201ENST00000564925 2320 ntBASIC18.48■□□□□ 0.55
VPS35Q96QK1 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS35Q96QK1 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS35Q96QK1 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.47■□□□□ 0.55
VPS35Q96QK1 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
VPS35Q96QK1 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms