Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLIP3Q96DZ5 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CLIP3Q96DZ5 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CLIP3Q96DZ5 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 AC009947.2-201ENST00000444014 672 ntBASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 HOMER2P1-201ENST00000455653 964 ntBASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CLIP3Q96DZ5 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 AC104581.1-202ENST00000635932 2618 ntBASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
CLIP3Q96DZ5 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
CLIP3Q96DZ5 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.96■□□□□ 0.46
CLIP3Q96DZ5 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 AL359075.1-203ENST00000462729 1002 ntBASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 AL441883.1-201ENST00000566170 1045 ntBASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.95■□□□□ 0.46
CLIP3Q96DZ5 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms