Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 RN7SL510P-201ENST00000581311 263 ntBASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 AC092119.3-201ENST00000612618 583 ntBASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 NPAP1P7-201ENST00000613027 823 ntBASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC21.37■■□□□ 1.01
SH3RF1Q7Z6J0 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 NT5C-210ENST00000582160 860 ntTSL 2 BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 LINC01311-201ENST00000565162 1445 ntBASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
SH3RF1Q7Z6J0 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 SKP2-204ENST00000508514 821 ntTSL 3 BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
SH3RF1Q7Z6J0 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 SPDYE13P-201ENST00000445314 798 ntBASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 CNP-204ENST00000472031 1019 ntTSL 2 BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 GCSHP2-201ENST00000560971 527 ntBASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 AC083906.6-201ENST00000641366 219 ntBASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SH3RF1Q7Z6J0 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SH3RF1Q7Z6J0 NEFHP1-201ENST00000412845 2629 ntBASIC21.33■■□□□ 1.01
SH3RF1Q7Z6J0 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SH3RF1Q7Z6J0 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.33■■□□□ 1.01
SH3RF1Q7Z6J0 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC21.33■■□□□ 1.01
SH3RF1Q7Z6J0 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SH3RF1Q7Z6J0 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SH3RF1Q7Z6J0 AL845331.1-201ENST00000424978 1190 ntBASIC21.33■■□□□ 1.01
SH3RF1Q7Z6J0 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC21.33■■□□□ 1.01
SH3RF1Q7Z6J0 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
SH3RF1Q7Z6J0 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC21.33■■□□□ 1
SH3RF1Q7Z6J0 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC21.33■■□□□ 1
SH3RF1Q7Z6J0 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1
SH3RF1Q7Z6J0 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.33■■□□□ 1
SH3RF1Q7Z6J0 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1
SH3RF1Q7Z6J0 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC21.33■■□□□ 1
SH3RF1Q7Z6J0 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC21.33■■□□□ 1
SH3RF1Q7Z6J0 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC21.33■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms