Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PPOX-214ENST00000535223 664 ntTSL 3 BASIC13.45□□□□□ -0.26
PRKDCP78527 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
PRKDCP78527 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC13.45□□□□□ -0.26
PRKDCP78527 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC13.45□□□□□ -0.26
PRKDCP78527 AC006128.1-201ENST00000624704 1661 ntBASIC13.45□□□□□ -0.26
PRKDCP78527 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
PRKDCP78527 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
PRKDCP78527 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
PRKDCP78527 INIP-202ENST00000374236 874 ntTSL 2 BASIC13.45□□□□□ -0.26
PRKDCP78527 AC092474.2-201ENST00000424288 719 ntBASIC13.45□□□□□ -0.26
PRKDCP78527 AL356309.3-201ENST00000624132 1934 ntBASIC13.45□□□□□ -0.26
PRKDCP78527 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
PRKDCP78527 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
PRKDCP78527 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC13.45□□□□□ -0.26
PRKDCP78527 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC13.45□□□□□ -0.26
PRKDCP78527 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC13.45□□□□□ -0.26
PRKDCP78527 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
PRKDCP78527 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
PRKDCP78527 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
PRKDCP78527 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
PRKDCP78527 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC13.44□□□□□ -0.26
PRKDCP78527 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC13.44□□□□□ -0.26
PRKDCP78527 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC13.44□□□□□ -0.26
PRKDCP78527 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
PRKDCP78527 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC13.44□□□□□ -0.26
PRKDCP78527 KRT8P7-201ENST00000533003 1432 ntBASIC13.44□□□□□ -0.26
PRKDCP78527 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC13.44□□□□□ -0.26
PRKDCP78527 AL138831.2-201ENST00000606564 490 ntBASIC13.44□□□□□ -0.26
PRKDCP78527 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
PRKDCP78527 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC13.44□□□□□ -0.26
PRKDCP78527 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC13.44□□□□□ -0.26
PRKDCP78527 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 RAB17-203ENST00000409576 466 ntTSL 3 BASIC13.44□□□□□ -0.26
PRKDCP78527 DDT-206ENST00000430101 573 ntTSL 2 BASIC13.44□□□□□ -0.26
PRKDCP78527 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 RNF34-208ENST00000555076 593 ntTSL 3 BASIC13.44□□□□□ -0.26
PRKDCP78527 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC13.44□□□□□ -0.26
PRKDCP78527 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
PRKDCP78527 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC13.44□□□□□ -0.26
PRKDCP78527 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 STOM-202ENST00000347359 870 ntTSL 2 BASIC13.44□□□□□ -0.26
PRKDCP78527 AC015922.1-201ENST00000421102 1152 ntBASIC13.44□□□□□ -0.26
PRKDCP78527 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC13.44□□□□□ -0.26
PRKDCP78527 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC13.44□□□□□ -0.26
PRKDCP78527 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC13.44□□□□□ -0.26
PRKDCP78527 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
PRKDCP78527 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC13.44□□□□□ -0.26
PRKDCP78527 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
PRKDCP78527 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
PRKDCP78527 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC13.43□□□□□ -0.26
PRKDCP78527 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
PRKDCP78527 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
PRKDCP78527 AC108751.1-201ENST00000490852 363 ntBASIC13.43□□□□□ -0.26
PRKDCP78527 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC13.43□□□□□ -0.26
PRKDCP78527 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
PRKDCP78527 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC13.43□□□□□ -0.26
PRKDCP78527 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC13.43□□□□□ -0.26
PRKDCP78527 AL513190.1-201ENST00000621254 727 ntBASIC13.43□□□□□ -0.26
PRKDCP78527 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC13.43□□□□□ -0.26
PRKDCP78527 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
PRKDCP78527 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
PRKDCP78527 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC13.43□□□□□ -0.26
PRKDCP78527 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
PRKDCP78527 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC13.43□□□□□ -0.26
PRKDCP78527 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
PRKDCP78527 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC13.43□□□□□ -0.26
PRKDCP78527 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC13.43□□□□□ -0.26
PRKDCP78527 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
PRKDCP78527 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
PRKDCP78527 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC13.43□□□□□ -0.26
PRKDCP78527 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC13.43□□□□□ -0.26
PRKDCP78527 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC13.43□□□□□ -0.26
PRKDCP78527 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
PRKDCP78527 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
PRKDCP78527 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
PRKDCP78527 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
PRKDCP78527 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
PRKDCP78527 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
PRKDCP78527 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC13.43□□□□□ -0.26
PRKDCP78527 NMU-203ENST00000507338 658 ntTSL 3 BASIC13.43□□□□□ -0.26
PRKDCP78527 AC109322.1-201ENST00000524499 1264 ntBASIC13.43□□□□□ -0.26
PRKDCP78527 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC13.43□□□□□ -0.26
PRKDCP78527 AC005829.1-201ENST00000570002 483 ntBASIC13.43□□□□□ -0.26
PRKDCP78527 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC13.43□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms