Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
LIMK1P53667 SLC25A1P1-201ENST00000528351 927 ntBASIC18.41■□□□□ 0.54
LIMK1P53667 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMK1P53667 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMK1P53667 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.41■□□□□ 0.54
LIMK1P53667 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMK1P53667 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMK1P53667 AL157888.1-201ENST00000631930 593 ntBASIC18.41■□□□□ 0.54
LIMK1P53667 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
LIMK1P53667 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMK1P53667 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMK1P53667 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
LIMK1P53667 AC233702.3-201ENST00000578656 1387 ntBASIC18.41■□□□□ 0.54
LIMK1P53667 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMK1P53667 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMK1P53667 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMK1P53667 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMK1P53667 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.4■□□□□ 0.54
LIMK1P53667 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMK1P53667 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMK1P53667 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LIMK1P53667 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.4■□□□□ 0.54
LIMK1P53667 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMK1P53667 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMK1P53667 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.4■□□□□ 0.54
LIMK1P53667 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMK1P53667 BX842568.4-201ENST00000421222 227 ntBASIC18.4■□□□□ 0.54
LIMK1P53667 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.4■□□□□ 0.54
LIMK1P53667 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.4■□□□□ 0.54
LIMK1P53667 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.4■□□□□ 0.54
LIMK1P53667 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.4■□□□□ 0.54
LIMK1P53667 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.4■□□□□ 0.54
LIMK1P53667 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.4■□□□□ 0.54
LIMK1P53667 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.4■□□□□ 0.54
LIMK1P53667 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LIMK1P53667 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.4■□□□□ 0.54
LIMK1P53667 AC106730.1-201ENST00000566722 1090 ntBASIC18.4■□□□□ 0.54
LIMK1P53667 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMK1P53667 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.4■□□□□ 0.54
LIMK1P53667 PMS2P7-201ENST00000506558 1336 ntBASIC18.4■□□□□ 0.54
LIMK1P53667 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMK1P53667 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMK1P53667 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIMK1P53667 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
LIMK1P53667 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
LIMK1P53667 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
LIMK1P53667 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.39■□□□□ 0.53
LIMK1P53667 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LIMK1P53667 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIMK1P53667 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIMK1P53667 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
LIMK1P53667 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.39■□□□□ 0.53
LIMK1P53667 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
LIMK1P53667 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.39■□□□□ 0.53
LIMK1P53667 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.39■□□□□ 0.53
LIMK1P53667 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIMK1P53667 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LIMK1P53667 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIMK1P53667 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
LIMK1P53667 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.39■□□□□ 0.53
LIMK1P53667 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.39■□□□□ 0.53
LIMK1P53667 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LIMK1P53667 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIMK1P53667 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.39■□□□□ 0.53
LIMK1P53667 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIMK1P53667 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
LIMK1P53667 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.38■□□□□ 0.53
LIMK1P53667 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMK1P53667 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIMK1P53667 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMK1P53667 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.38■□□□□ 0.53
LIMK1P53667 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
LIMK1P53667 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMK1P53667 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.38■□□□□ 0.53
LIMK1P53667 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.38■□□□□ 0.53
LIMK1P53667 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.38■□□□□ 0.53
LIMK1P53667 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMK1P53667 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMK1P53667 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.38■□□□□ 0.53
LIMK1P53667 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.38■□□□□ 0.53
LIMK1P53667 IGHV3-47-201ENST00000425060 335 ntBASIC18.38■□□□□ 0.53
LIMK1P53667 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.38■□□□□ 0.53
LIMK1P53667 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.38■□□□□ 0.53
LIMK1P53667 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.38■□□□□ 0.53
LIMK1P53667 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.38■□□□□ 0.53
LIMK1P53667 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.38■□□□□ 0.53
LIMK1P53667 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.38■□□□□ 0.53
LIMK1P53667 IGHV3-41-201ENST00000613121 348 ntBASIC18.38■□□□□ 0.53
LIMK1P53667 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.38■□□□□ 0.53
LIMK1P53667 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.38■□□□□ 0.53
LIMK1P53667 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMK1P53667 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIMK1P53667 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIMK1P53667 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIMK1P53667 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.38■□□□□ 0.53
LIMK1P53667 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIMK1P53667 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
LIMK1P53667 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIMK1P53667 LINC00167-201ENST00000530583 1419 ntBASIC18.38■□□□□ 0.53
LIMK1P53667 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms