Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 ATP5G2P1-201ENST00000433580 426 ntBASIC20.47■□□□□ 0.87
CLCN3P51790 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CLCN3P51790 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CLCN3P51790 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.47■□□□□ 0.87
CLCN3P51790 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CLCN3P51790 AC092119.3-201ENST00000612618 583 ntBASIC20.47■□□□□ 0.87
CLCN3P51790 NPAP1P7-201ENST00000613027 823 ntBASIC20.47■□□□□ 0.87
CLCN3P51790 AC083906.6-201ENST00000641366 219 ntBASIC20.47■□□□□ 0.87
CLCN3P51790 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.47■□□□□ 0.87
CLCN3P51790 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.47■□□□□ 0.87
CLCN3P51790 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLCN3P51790 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLCN3P51790 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLCN3P51790 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLCN3P51790 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.47■□□□□ 0.87
CLCN3P51790 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.47■□□□□ 0.87
CLCN3P51790 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLCN3P51790 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.47■□□□□ 0.87
CLCN3P51790 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.47■□□□□ 0.87
CLCN3P51790 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLCN3P51790 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CLCN3P51790 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.46■□□□□ 0.87
CLCN3P51790 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLCN3P51790 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLCN3P51790 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CLCN3P51790 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLCN3P51790 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLCN3P51790 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLCN3P51790 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.46■□□□□ 0.87
CLCN3P51790 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CLCN3P51790 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLCN3P51790 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLCN3P51790 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.46■□□□□ 0.87
CLCN3P51790 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CLCN3P51790 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLCN3P51790 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CLCN3P51790 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLCN3P51790 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.46■□□□□ 0.87
CLCN3P51790 RNF126P1-202ENST00000569893 925 ntBASIC20.46■□□□□ 0.87
CLCN3P51790 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLCN3P51790 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLCN3P51790 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.46■□□□□ 0.87
CLCN3P51790 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.46■□□□□ 0.87
CLCN3P51790 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLCN3P51790 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLCN3P51790 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLCN3P51790 AC016734.2-201ENST00000624325 1377 ntBASIC20.46■□□□□ 0.87
CLCN3P51790 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.46■□□□□ 0.87
CLCN3P51790 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CLCN3P51790 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLCN3P51790 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLCN3P51790 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.45■□□□□ 0.86
CLCN3P51790 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CLCN3P51790 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.45■□□□□ 0.86
CLCN3P51790 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CLCN3P51790 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.45■□□□□ 0.86
CLCN3P51790 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CLCN3P51790 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLCN3P51790 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLCN3P51790 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLCN3P51790 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC20.45■□□□□ 0.86
CLCN3P51790 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.45■□□□□ 0.86
CLCN3P51790 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.45■□□□□ 0.86
CLCN3P51790 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.45■□□□□ 0.86
CLCN3P51790 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.45■□□□□ 0.86
CLCN3P51790 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CLCN3P51790 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLCN3P51790 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CLCN3P51790 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLCN3P51790 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC20.45■□□□□ 0.86
CLCN3P51790 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLCN3P51790 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLCN3P51790 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLCN3P51790 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.44■□□□□ 0.86
CLCN3P51790 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.44■□□□□ 0.86
CLCN3P51790 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLCN3P51790 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLCN3P51790 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLCN3P51790 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLCN3P51790 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLCN3P51790 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLCN3P51790 AC093525.10-201ENST00000625130 1569 ntBASIC20.44■□□□□ 0.86
CLCN3P51790 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
CLCN3P51790 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLCN3P51790 KRT18P48-201ENST00000434763 852 ntBASIC20.44■□□□□ 0.86
CLCN3P51790 PVRIG2P-201ENST00000435460 978 ntBASIC20.44■□□□□ 0.86
CLCN3P51790 TSSC2-201ENST00000450217 709 ntBASIC20.44■□□□□ 0.86
CLCN3P51790 BX276092.5-203ENST00000456199 560 ntBASIC20.44■□□□□ 0.86
CLCN3P51790 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.44■□□□□ 0.86
CLCN3P51790 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CLCN3P51790 CLEC4GP1-201ENST00000596555 870 ntBASIC20.44■□□□□ 0.86
CLCN3P51790 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.44■□□□□ 0.86
CLCN3P51790 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLCN3P51790 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLCN3P51790 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.44■□□□□ 0.86
CLCN3P51790 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CLCN3P51790 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLCN3P51790 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.44■□□□□ 0.86
CLCN3P51790 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLCN3P51790 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms