Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIG3P49916 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIG3P49916 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIG3P49916 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.57■□□□□ 0.72
LIG3P49916 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
LIG3P49916 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIG3P49916 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIG3P49916 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIG3P49916 KRT17P2-201ENST00000300992 1314 ntBASIC19.56■□□□□ 0.72
LIG3P49916 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIG3P49916 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIG3P49916 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIG3P49916 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIG3P49916 NIFKP9-201ENST00000419265 221 ntBASIC19.56■□□□□ 0.72
LIG3P49916 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIG3P49916 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
LIG3P49916 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.56■□□□□ 0.72
LIG3P49916 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.56■□□□□ 0.72
LIG3P49916 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.56■□□□□ 0.72
LIG3P49916 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.56■□□□□ 0.72
LIG3P49916 MIR4785-201ENST00000585005 73 ntBASIC19.56■□□□□ 0.72
LIG3P49916 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.56■□□□□ 0.72
LIG3P49916 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.56■□□□□ 0.72
LIG3P49916 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.56■□□□□ 0.72
LIG3P49916 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIG3P49916 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.56■□□□□ 0.72
LIG3P49916 AC124067.4-201ENST00000519691 2379 ntBASIC19.56■□□□□ 0.72
LIG3P49916 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIG3P49916 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
LIG3P49916 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LIG3P49916 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
LIG3P49916 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIG3P49916 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIG3P49916 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LIG3P49916 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.55■□□□□ 0.72
LIG3P49916 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.55■□□□□ 0.72
LIG3P49916 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIG3P49916 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC19.55■□□□□ 0.72
LIG3P49916 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
LIG3P49916 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
LIG3P49916 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIG3P49916 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LIG3P49916 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIG3P49916 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LIG3P49916 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.55■□□□□ 0.72
LIG3P49916 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.55■□□□□ 0.72
LIG3P49916 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
LIG3P49916 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIG3P49916 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.55■□□□□ 0.72
LIG3P49916 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIG3P49916 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIG3P49916 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIG3P49916 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIG3P49916 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.55■□□□□ 0.72
LIG3P49916 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LIG3P49916 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.54■□□□□ 0.72
LIG3P49916 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.54■□□□□ 0.72
LIG3P49916 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.54■□□□□ 0.72
LIG3P49916 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.54■□□□□ 0.72
LIG3P49916 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.54■□□□□ 0.72
LIG3P49916 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
LIG3P49916 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.54■□□□□ 0.72
LIG3P49916 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.54■□□□□ 0.72
LIG3P49916 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
LIG3P49916 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
LIG3P49916 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
LIG3P49916 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.54■□□□□ 0.72
LIG3P49916 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.54■□□□□ 0.72
LIG3P49916 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 KSR1P1-201ENST00000446298 240 ntBASIC19.54■□□□□ 0.72
LIG3P49916 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
LIG3P49916 AC026471.5-201ENST00000615068 467 ntBASIC19.54■□□□□ 0.72
LIG3P49916 CR392000.1-201ENST00000624770 1228 ntBASIC19.54■□□□□ 0.72
LIG3P49916 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
LIG3P49916 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
LIG3P49916 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC19.54■□□□□ 0.72
LIG3P49916 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC19.54■□□□□ 0.72
LIG3P49916 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.54■□□□□ 0.72
LIG3P49916 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
LIG3P49916 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LIG3P49916 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.53■□□□□ 0.72
LIG3P49916 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIG3P49916 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms