Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC114341.1-201ENST00000618070 349 ntBASIC18.53■□□□□ 0.56
CXCL12P48061 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.53■□□□□ 0.56
CXCL12P48061 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.53■□□□□ 0.56
CXCL12P48061 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.53■□□□□ 0.56
CXCL12P48061 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 TREX1-205ENST00000625293 1783 ntBASIC18.53■□□□□ 0.56
CXCL12P48061 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CXCL12P48061 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.52■□□□□ 0.56
CXCL12P48061 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CXCL12P48061 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.52■□□□□ 0.56
CXCL12P48061 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.52■□□□□ 0.56
CXCL12P48061 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
CXCL12P48061 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.52■□□□□ 0.56
CXCL12P48061 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CXCL12P48061 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.52■□□□□ 0.56
CXCL12P48061 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
CXCL12P48061 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.52■□□□□ 0.56
CXCL12P48061 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.52■□□□□ 0.56
CXCL12P48061 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.52■□□□□ 0.56
CXCL12P48061 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.52■□□□□ 0.56
CXCL12P48061 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.52■□□□□ 0.56
CXCL12P48061 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.52■□□□□ 0.56
CXCL12P48061 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.52■□□□□ 0.56
CXCL12P48061 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.52■□□□□ 0.56
CXCL12P48061 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.52■□□□□ 0.55
CXCL12P48061 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.52■□□□□ 0.55
CXCL12P48061 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.52■□□□□ 0.55
CXCL12P48061 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.52■□□□□ 0.55
CXCL12P48061 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
CXCL12P48061 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.52■□□□□ 0.55
CXCL12P48061 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CXCL12P48061 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.51■□□□□ 0.55
CXCL12P48061 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.51■□□□□ 0.55
CXCL12P48061 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CXCL12P48061 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 AC018712.1-201ENST00000455767 687 ntBASIC18.51■□□□□ 0.55
CXCL12P48061 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.51■□□□□ 0.55
CXCL12P48061 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.51■□□□□ 0.55
CXCL12P48061 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.51■□□□□ 0.55
CXCL12P48061 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.51■□□□□ 0.55
CXCL12P48061 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.51■□□□□ 0.55
CXCL12P48061 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.51■□□□□ 0.55
CXCL12P48061 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.51■□□□□ 0.55
CXCL12P48061 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.51■□□□□ 0.55
CXCL12P48061 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CXCL12P48061 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CXCL12P48061 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.5■□□□□ 0.55
CXCL12P48061 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.5■□□□□ 0.55
CXCL12P48061 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CXCL12P48061 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.5■□□□□ 0.55
CXCL12P48061 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CXCL12P48061 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CXCL12P48061 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.5■□□□□ 0.55
CXCL12P48061 RPS2P28-201ENST00000314255 741 ntBASIC18.5■□□□□ 0.55
CXCL12P48061 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.5■□□□□ 0.55
CXCL12P48061 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.5■□□□□ 0.55
CXCL12P48061 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.5■□□□□ 0.55
CXCL12P48061 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.5■□□□□ 0.55
CXCL12P48061 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms