Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC114341.1-201ENST00000618070 349 ntBASIC18.53■□□□□ 0.56
CXCL12P48061 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.53■□□□□ 0.56
CXCL12P48061 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.53■□□□□ 0.56
CXCL12P48061 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.53■□□□□ 0.56
CXCL12P48061 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CXCL12P48061 TREX1-205ENST00000625293 1783 ntBASIC18.53■□□□□ 0.56
CXCL12P48061 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CXCL12P48061 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.52■□□□□ 0.56
CXCL12P48061 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CXCL12P48061 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.52■□□□□ 0.56
CXCL12P48061 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.52■□□□□ 0.56
CXCL12P48061 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
CXCL12P48061 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.52■□□□□ 0.56
CXCL12P48061 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CXCL12P48061 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.52■□□□□ 0.56
CXCL12P48061 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
CXCL12P48061 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.52■□□□□ 0.56
CXCL12P48061 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.52■□□□□ 0.56
CXCL12P48061 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.52■□□□□ 0.56
CXCL12P48061 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.52■□□□□ 0.56
CXCL12P48061 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.52■□□□□ 0.56
CXCL12P48061 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.52■□□□□ 0.56
CXCL12P48061 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CXCL12P48061 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.52■□□□□ 0.56
CXCL12P48061 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.52■□□□□ 0.56
CXCL12P48061 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.52■□□□□ 0.55
CXCL12P48061 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.52■□□□□ 0.55
CXCL12P48061 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.52■□□□□ 0.55
CXCL12P48061 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.52■□□□□ 0.55
CXCL12P48061 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
CXCL12P48061 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CXCL12P48061 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.52■□□□□ 0.55
CXCL12P48061 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CXCL12P48061 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.51■□□□□ 0.55
CXCL12P48061 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.51■□□□□ 0.55
CXCL12P48061 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CXCL12P48061 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 AC018712.1-201ENST00000455767 687 ntBASIC18.51■□□□□ 0.55
CXCL12P48061 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.51■□□□□ 0.55
CXCL12P48061 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.51■□□□□ 0.55
CXCL12P48061 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.51■□□□□ 0.55
CXCL12P48061 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.51■□□□□ 0.55
CXCL12P48061 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.51■□□□□ 0.55
CXCL12P48061 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.51■□□□□ 0.55
CXCL12P48061 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.51■□□□□ 0.55
CXCL12P48061 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.51■□□□□ 0.55
CXCL12P48061 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CXCL12P48061 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CXCL12P48061 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CXCL12P48061 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.5■□□□□ 0.55
CXCL12P48061 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.5■□□□□ 0.55
CXCL12P48061 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CXCL12P48061 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.5■□□□□ 0.55
CXCL12P48061 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CXCL12P48061 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CXCL12P48061 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.5■□□□□ 0.55
CXCL12P48061 RPS2P28-201ENST00000314255 741 ntBASIC18.5■□□□□ 0.55
CXCL12P48061 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.5■□□□□ 0.55
CXCL12P48061 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.5■□□□□ 0.55
CXCL12P48061 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.5■□□□□ 0.55
CXCL12P48061 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.5■□□□□ 0.55
CXCL12P48061 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms