Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.26■□□□□ 0.51
SHMT2P34897 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
SHMT2P34897 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHMT2P34897 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHMT2P34897 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHMT2P34897 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.25■□□□□ 0.51
SHMT2P34897 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
SHMT2P34897 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHMT2P34897 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.25■□□□□ 0.51
SHMT2P34897 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHMT2P34897 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.25■□□□□ 0.51
SHMT2P34897 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHMT2P34897 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHMT2P34897 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHMT2P34897 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHMT2P34897 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHMT2P34897 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.25■□□□□ 0.51
SHMT2P34897 AC010203.1-204ENST00000548782 407 ntBASIC18.25■□□□□ 0.51
SHMT2P34897 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SHMT2P34897 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.25■□□□□ 0.51
SHMT2P34897 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.25■□□□□ 0.51
SHMT2P34897 AL161938.1-201ENST00000569833 2180 ntBASIC18.25■□□□□ 0.51
SHMT2P34897 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHMT2P34897 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHMT2P34897 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.25■□□□□ 0.51
SHMT2P34897 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.24■□□□□ 0.51
SHMT2P34897 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHMT2P34897 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHMT2P34897 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHMT2P34897 AL512353.2-201ENST00000448759 1962 ntBASIC18.24■□□□□ 0.51
SHMT2P34897 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.24■□□□□ 0.51
SHMT2P34897 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.24■□□□□ 0.51
SHMT2P34897 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHMT2P34897 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHMT2P34897 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHMT2P34897 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SHMT2P34897 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SHMT2P34897 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.24■□□□□ 0.51
SHMT2P34897 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHMT2P34897 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SHMT2P34897 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHMT2P34897 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHMT2P34897 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHMT2P34897 RCN1P1-201ENST00000400413 996 ntBASIC18.24■□□□□ 0.51
SHMT2P34897 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.24■□□□□ 0.51
SHMT2P34897 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHMT2P34897 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.24■□□□□ 0.51
SHMT2P34897 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHMT2P34897 FAM210CP-201ENST00000445714 574 ntBASIC18.24■□□□□ 0.51
SHMT2P34897 MCCD1P1-208ENST00000445732 328 ntBASIC18.24■□□□□ 0.51
SHMT2P34897 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHMT2P34897 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.24■□□□□ 0.51
SHMT2P34897 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.24■□□□□ 0.51
SHMT2P34897 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.24■□□□□ 0.51
SHMT2P34897 MIR4674-201ENST00000582457 87 ntBASIC18.24■□□□□ 0.51
SHMT2P34897 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.24■□□□□ 0.51
SHMT2P34897 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SHMT2P34897 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHMT2P34897 AC009113.1-201ENST00000570267 2443 ntBASIC18.24■□□□□ 0.51
SHMT2P34897 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.24■□□□□ 0.51
SHMT2P34897 GPAT2P1-201ENST00000444924 1672 ntBASIC18.24■□□□□ 0.51
SHMT2P34897 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.24■□□□□ 0.51
SHMT2P34897 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.23■□□□□ 0.51
SHMT2P34897 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHMT2P34897 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHMT2P34897 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
SHMT2P34897 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SHMT2P34897 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SHMT2P34897 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
SHMT2P34897 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SHMT2P34897 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHMT2P34897 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.23■□□□□ 0.51
SHMT2P34897 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHMT2P34897 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHMT2P34897 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHMT2P34897 AL023284.2-201ENST00000405850 579 ntBASIC18.23■□□□□ 0.51
SHMT2P34897 KRT18P21-201ENST00000515767 1272 ntBASIC18.23■□□□□ 0.51
SHMT2P34897 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SHMT2P34897 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHMT2P34897 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHMT2P34897 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.23■□□□□ 0.51
SHMT2P34897 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHMT2P34897 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHMT2P34897 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHMT2P34897 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHMT2P34897 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.23■□□□□ 0.51
SHMT2P34897 AC073508.3-201ENST00000619697 1419 ntBASIC18.23■□□□□ 0.51
SHMT2P34897 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.23■□□□□ 0.51
SHMT2P34897 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHMT2P34897 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SHMT2P34897 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.23■□□□□ 0.51
SHMT2P34897 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHMT2P34897 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHMT2P34897 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHMT2P34897 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SHMT2P34897 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms