Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HOXC4P09017 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.18■□□□□ 0.5
HOXC4P09017 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.18■□□□□ 0.5
HOXC4P09017 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.18■□□□□ 0.5
HOXC4P09017 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
HOXC4P09017 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HOXC4P09017 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.18■□□□□ 0.5
HOXC4P09017 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HOXC4P09017 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
HOXC4P09017 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
HOXC4P09017 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HOXC4P09017 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HOXC4P09017 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HOXC4P09017 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
HOXC4P09017 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.17■□□□□ 0.5
HOXC4P09017 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.17■□□□□ 0.5
HOXC4P09017 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.17■□□□□ 0.5
HOXC4P09017 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.17■□□□□ 0.5
HOXC4P09017 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HOXC4P09017 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.17■□□□□ 0.5
HOXC4P09017 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HOXC4P09017 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HOXC4P09017 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HOXC4P09017 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
HOXC4P09017 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HOXC4P09017 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HOXC4P09017 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HOXC4P09017 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HOXC4P09017 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HOXC4P09017 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
HOXC4P09017 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.16■□□□□ 0.5
HOXC4P09017 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.16■□□□□ 0.5
HOXC4P09017 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
HOXC4P09017 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.16■□□□□ 0.5
HOXC4P09017 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 TSPY22P-201ENST00000427496 604 ntBASIC18.16■□□□□ 0.5
HOXC4P09017 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
HOXC4P09017 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.16■□□□□ 0.5
HOXC4P09017 AP003733.1-201ENST00000491725 852 ntBASIC18.16■□□□□ 0.5
HOXC4P09017 KRT18P56-201ENST00000507275 550 ntBASIC18.16■□□□□ 0.5
HOXC4P09017 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.16■□□□□ 0.5
HOXC4P09017 RNF126P1-202ENST00000569893 925 ntBASIC18.16■□□□□ 0.5
HOXC4P09017 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.16■□□□□ 0.5
HOXC4P09017 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
HOXC4P09017 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
HOXC4P09017 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HOXC4P09017 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HOXC4P09017 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HOXC4P09017 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.15■□□□□ 0.5
HOXC4P09017 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.15■□□□□ 0.5
HOXC4P09017 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HOXC4P09017 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HOXC4P09017 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HOXC4P09017 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HOXC4P09017 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HOXC4P09017 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.15■□□□□ 0.5
HOXC4P09017 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HOXC4P09017 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HOXC4P09017 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HOXC4P09017 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HOXC4P09017 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HOXC4P09017 CHCHD2P8-201ENST00000429873 447 ntBASIC18.15■□□□□ 0.5
HOXC4P09017 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HOXC4P09017 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.15■□□□□ 0.5
HOXC4P09017 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.15■□□□□ 0.5
HOXC4P09017 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
HOXC4P09017 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.15■□□□□ 0.5
HOXC4P09017 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.15■□□□□ 0.5
HOXC4P09017 AC005332.3-201ENST00000589904 676 ntBASIC18.15■□□□□ 0.5
HOXC4P09017 AC008687.5-201ENST00000593746 558 ntBASIC18.15■□□□□ 0.5
HOXC4P09017 AL390719.2-201ENST00000606993 987 ntBASIC18.15■□□□□ 0.5
HOXC4P09017 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.15■□□□□ 0.5
HOXC4P09017 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HOXC4P09017 MYLKP1-201ENST00000509077 1580 ntBASIC18.15■□□□□ 0.5
HOXC4P09017 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
HOXC4P09017 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.15■□□□□ 0.5
HOXC4P09017 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.15■□□□□ 0.5
HOXC4P09017 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.15■□□□□ 0.5
HOXC4P09017 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
HOXC4P09017 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
HOXC4P09017 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
HOXC4P09017 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
HOXC4P09017 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
HOXC4P09017 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms