Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LDLRP01130 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
LDLRP01130 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDLRP01130 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.03■□□□□ 0.48
LDLRP01130 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDLRP01130 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
LDLRP01130 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDLRP01130 IRX1P1-201ENST00000438849 1838 ntBASIC18.02■□□□□ 0.48
LDLRP01130 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.02■□□□□ 0.48
LDLRP01130 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.02■□□□□ 0.48
LDLRP01130 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDLRP01130 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDLRP01130 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.02■□□□□ 0.48
LDLRP01130 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDLRP01130 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDLRP01130 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LDLRP01130 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDLRP01130 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
LDLRP01130 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDLRP01130 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDLRP01130 KRT18P57-201ENST00000443599 1254 ntBASIC18.02■□□□□ 0.48
LDLRP01130 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LDLRP01130 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LDLRP01130 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.02■□□□□ 0.48
LDLRP01130 RBM17P1-201ENST00000453646 1190 ntBASIC18.02■□□□□ 0.48
LDLRP01130 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LDLRP01130 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.02■□□□□ 0.48
LDLRP01130 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.02■□□□□ 0.48
LDLRP01130 KRT8P9-201ENST00000558927 1449 ntBASIC18.02■□□□□ 0.48
LDLRP01130 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.02■□□□□ 0.48
LDLRP01130 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.02■□□□□ 0.48
LDLRP01130 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
LDLRP01130 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LDLRP01130 FZD10-202ENST00000539839 3282 ntBASIC18.02■□□□□ 0.47
LDLRP01130 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LDLRP01130 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.47
LDLRP01130 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LDLRP01130 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LDLRP01130 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
LDLRP01130 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LDLRP01130 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.02■□□□□ 0.47
LDLRP01130 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
LDLRP01130 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LDLRP01130 AC018553.1-201ENST00000616682 1458 ntBASIC18.01■□□□□ 0.47
LDLRP01130 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LDLRP01130 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.01■□□□□ 0.47
LDLRP01130 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.01■□□□□ 0.47
LDLRP01130 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LDLRP01130 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.01■□□□□ 0.47
LDLRP01130 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LDLRP01130 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LDLRP01130 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
LDLRP01130 FAM197Y1-201ENST00000421178 764 ntBASIC18.01■□□□□ 0.47
LDLRP01130 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.01■□□□□ 0.47
LDLRP01130 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.01■□□□□ 0.47
LDLRP01130 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LDLRP01130 AC023632.3-201ENST00000521633 145 ntBASIC18.01■□□□□ 0.47
LDLRP01130 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.01■□□□□ 0.47
LDLRP01130 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.01■□□□□ 0.47
LDLRP01130 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.01■□□□□ 0.47
LDLRP01130 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.01■□□□□ 0.47
LDLRP01130 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.01■□□□□ 0.47
LDLRP01130 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LDLRP01130 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.01■□□□□ 0.47
LDLRP01130 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.01■□□□□ 0.47
LDLRP01130 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LDLRP01130 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LDLRP01130 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LDLRP01130 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.01■□□□□ 0.47
LDLRP01130 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.01■□□□□ 0.47
LDLRP01130 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.01■□□□□ 0.47
LDLRP01130 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
LDLRP01130 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LDLRP01130 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LDLRP01130 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
LDLRP01130 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18■□□□□ 0.47
LDLRP01130 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18■□□□□ 0.47
LDLRP01130 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LDLRP01130 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LDLRP01130 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LDLRP01130 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18■□□□□ 0.47
LDLRP01130 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18■□□□□ 0.47
LDLRP01130 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18■□□□□ 0.47
LDLRP01130 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
LDLRP01130 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
LDLRP01130 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18■□□□□ 0.47
LDLRP01130 KRT16P5-201ENST00000455284 522 ntBASIC18■□□□□ 0.47
LDLRP01130 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18■□□□□ 0.47
LDLRP01130 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LDLRP01130 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18■□□□□ 0.47
LDLRP01130 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18■□□□□ 0.47
LDLRP01130 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
LDLRP01130 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
LDLRP01130 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18■□□□□ 0.47
LDLRP01130 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
LDLRP01130 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18■□□□□ 0.47
LDLRP01130 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LDLRP01130 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LDLRP01130 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18■□□□□ 0.47
LDLRP01130 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms