Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.53■□□□□ 0.4
LDB3O75112 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.53■□□□□ 0.4
LDB3O75112 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.53■□□□□ 0.4
LDB3O75112 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.53■□□□□ 0.4
LDB3O75112 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
LDB3O75112 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.53■□□□□ 0.4
LDB3O75112 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
LDB3O75112 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.53■□□□□ 0.4
LDB3O75112 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.53■□□□□ 0.4
LDB3O75112 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.53■□□□□ 0.4
LDB3O75112 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.53■□□□□ 0.4
LDB3O75112 KRT18P57-201ENST00000443599 1254 ntBASIC17.53■□□□□ 0.4
LDB3O75112 AC009947.2-201ENST00000444014 672 ntBASIC17.53■□□□□ 0.4
LDB3O75112 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.53■□□□□ 0.4
LDB3O75112 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.53■□□□□ 0.4
LDB3O75112 AL512604.3-201ENST00000569583 964 ntBASIC17.53■□□□□ 0.4
LDB3O75112 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.53■□□□□ 0.4
LDB3O75112 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.53■□□□□ 0.4
LDB3O75112 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
LDB3O75112 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
LDB3O75112 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.53■□□□□ 0.4
LDB3O75112 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.53■□□□□ 0.4
LDB3O75112 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.53■□□□□ 0.4
LDB3O75112 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
LDB3O75112 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.52■□□□□ 0.4
LDB3O75112 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.52■□□□□ 0.4
LDB3O75112 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.52■□□□□ 0.4
LDB3O75112 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
LDB3O75112 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.52■□□□□ 0.4
LDB3O75112 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.52■□□□□ 0.4
LDB3O75112 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LDB3O75112 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
LDB3O75112 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
LDB3O75112 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.52■□□□□ 0.39
LDB3O75112 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
LDB3O75112 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LDB3O75112 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
LDB3O75112 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
LDB3O75112 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
LDB3O75112 AC138932.1-201ENST00000534164 6830 ntBASIC17.51■□□□□ 0.39
LDB3O75112 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.51■□□□□ 0.39
LDB3O75112 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.51■□□□□ 0.39
LDB3O75112 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.51■□□□□ 0.39
LDB3O75112 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LDB3O75112 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LDB3O75112 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LDB3O75112 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LDB3O75112 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LDB3O75112 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LDB3O75112 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.51■□□□□ 0.39
LDB3O75112 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.51■□□□□ 0.39
LDB3O75112 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LDB3O75112 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
LDB3O75112 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.51■□□□□ 0.39
LDB3O75112 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.51■□□□□ 0.39
LDB3O75112 AL138966.2-201ENST00000621997 464 ntBASIC17.51■□□□□ 0.39
LDB3O75112 AC141257.4-201ENST00000634557 245 ntBASIC17.51■□□□□ 0.39
LDB3O75112 AC136944.6-201ENST00000634818 245 ntBASIC17.51■□□□□ 0.39
LDB3O75112 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
LDB3O75112 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LDB3O75112 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.51■□□□□ 0.39
LDB3O75112 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.51■□□□□ 0.39
LDB3O75112 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LDB3O75112 AC034236.2-201ENST00000606662 1610 ntBASIC17.5■□□□□ 0.39
LDB3O75112 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.5■□□□□ 0.39
LDB3O75112 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
LDB3O75112 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LDB3O75112 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms