Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CCDC85CA6NKD9 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC20.6■□□□□ 0.89
CCDC85CA6NKD9 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC85CA6NKD9 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC85CA6NKD9 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC85CA6NKD9 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC20.6■□□□□ 0.89
CCDC85CA6NKD9 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
CCDC85CA6NKD9 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
CCDC85CA6NKD9 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC85CA6NKD9 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC85CA6NKD9 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
CCDC85CA6NKD9 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC85CA6NKD9 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 NMU-203ENST00000507338 658 ntTSL 3 BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 AL390955.2-201ENST00000603032 514 ntBASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 AL049796.1-201ENST00000565336 1766 ntBASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CCDC85CA6NKD9 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 KRT89P-201ENST00000620027 1478 ntBASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 AP005018.1-201ENST00000525475 301 ntBASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 MAL2-202ENST00000531508 892 ntTSL 3 BASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 RN7SL204P-201ENST00000582831 262 ntBASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 YTHDF3-AS1-201ENST00000603538 718 ntBASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 PGM5P2-202ENST00000637225 1043 ntBASIC20.58■□□□□ 0.89
CCDC85CA6NKD9 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.58■□□□□ 0.88
CCDC85CA6NKD9 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC85CA6NKD9 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC85CA6NKD9 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC85CA6NKD9 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC85CA6NKD9 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 AP002414.1-201ENST00000391405 1147 ntBASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 CRYGEP-201ENST00000412192 528 ntBASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 TFAMP1-201ENST00000412727 736 ntBASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 TSPY16P-201ENST00000449843 468 ntBASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 PDPK2P-202ENST00000562415 1191 ntBASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 AC004835.2-201ENST00000603762 682 ntBASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC85CA6NKD9 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC85CA6NKD9 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC85CA6NKD9 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC85CA6NKD9 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC85CA6NKD9 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
CCDC85CA6NKD9 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC85CA6NKD9 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC85CA6NKD9 GRAP-202ENST00000395635 834 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC85CA6NKD9 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC85CA6NKD9 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC85CA6NKD9 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CCDC85CA6NKD9 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms