Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 FAM87A-204ENST00000613235 858 ntBASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 AL390961.4-201ENST00000623958 2535 ntBASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 Z98044.1-201ENST00000632503 1764 ntBASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 AC090164.3-201ENST00000610780 2143 ntBASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 ZNF815P-204ENST00000434898 1737 ntBASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHB3Q9Y5E6 KRT8P41-201ENST00000533985 1514 ntBASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 AC005332.8-201ENST00000622750 2735 ntBASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 AK4P3-201ENST00000418260 669 ntBASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 CA15P1-201ENST00000481698 905 ntBASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 AC010653.2-201ENST00000623505 997 ntBASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.28■□□□□ 0.52
PCDHB3Q9Y5E6 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 WIZP1-201ENST00000531444 2299 ntBASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 HMGA1P5-201ENST00000412453 271 ntBASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHB3Q9Y5E6 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
PCDHB3Q9Y5E6 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
PCDHB3Q9Y5E6 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
PCDHB3Q9Y5E6 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 TSPY17P-201ENST00000450329 467 ntBASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 CKBP1-201ENST00000565489 1086 ntBASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.26■□□□□ 0.51
PCDHB3Q9Y5E6 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms