Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC14.02□□□□□ -0.17
LINC00477Q96M19 HLA-L-209ENST00000420110 1011 ntBASIC14.02□□□□□ -0.17
LINC00477Q96M19 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
LINC00477Q96M19 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC00477Q96M19 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC14.02□□□□□ -0.17
LINC00477Q96M19 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
LINC00477Q96M19 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
LINC00477Q96M19 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC14.02□□□□□ -0.17
LINC00477Q96M19 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC14.02□□□□□ -0.17
LINC00477Q96M19 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC00477Q96M19 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC00477Q96M19 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC00477Q96M19 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
LINC00477Q96M19 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC14.02□□□□□ -0.17
LINC00477Q96M19 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC14.02□□□□□ -0.17
LINC00477Q96M19 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC00477Q96M19 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
LINC00477Q96M19 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LINC00477Q96M19 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
LINC00477Q96M19 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC14.02□□□□□ -0.17
LINC00477Q96M19 ABALON-201ENST00000629058 1903 ntBASIC14.02□□□□□ -0.17
LINC00477Q96M19 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 MADD-208ENST00000405573 1823 ntTSL 5 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 KRT8P11-201ENST00000409686 1436 ntBASIC14.01□□□□□ -0.17
LINC00477Q96M19 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 NIFKP9-201ENST00000419265 221 ntBASIC14.01□□□□□ -0.17
LINC00477Q96M19 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 AC007613.1-201ENST00000572811 2597 ntBASIC14.01□□□□□ -0.17
LINC00477Q96M19 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC00477Q96M19 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 NFYC-AS1-201ENST00000606277 1687 ntBASIC14.01□□□□□ -0.17
LINC00477Q96M19 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC14.01□□□□□ -0.17
LINC00477Q96M19 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00477Q96M19 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00477Q96M19 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC14□□□□□ -0.17
LINC00477Q96M19 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00477Q96M19 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00477Q96M19 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC14□□□□□ -0.17
LINC00477Q96M19 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
LINC00477Q96M19 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00477Q96M19 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC14□□□□□ -0.17
LINC00477Q96M19 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
LINC00477Q96M19 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
LINC00477Q96M19 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC14□□□□□ -0.17
LINC00477Q96M19 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC14□□□□□ -0.17
LINC00477Q96M19 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
LINC00477Q96M19 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
LINC00477Q96M19 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00477Q96M19 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00477Q96M19 KSR1P1-201ENST00000446298 240 ntBASIC14□□□□□ -0.17
LINC00477Q96M19 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC14□□□□□ -0.17
LINC00477Q96M19 AP002982.1-201ENST00000492365 877 ntBASIC14□□□□□ -0.17
LINC00477Q96M19 AC124016.1-201ENST00000609552 612 ntBASIC14□□□□□ -0.17
LINC00477Q96M19 AL353708.3-201ENST00000610272 989 ntBASIC14□□□□□ -0.17
LINC00477Q96M19 CABP2-204ENST00000636477 941 ntTSL 5 BASIC14□□□□□ -0.17
LINC00477Q96M19 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC14□□□□□ -0.17
LINC00477Q96M19 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00477Q96M19 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00477Q96M19 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC14□□□□□ -0.17
LINC00477Q96M19 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00477Q96M19 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC14□□□□□ -0.17
LINC00477Q96M19 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00477Q96M19 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC00477Q96M19 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC14□□□□□ -0.17
LINC00477Q96M19 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms