Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
USP41Q3LFD5 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.85■□□□□ 0.77
USP41Q3LFD5 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
USP41Q3LFD5 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.85■□□□□ 0.77
USP41Q3LFD5 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP41Q3LFD5 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.85■□□□□ 0.77
USP41Q3LFD5 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.85■□□□□ 0.77
USP41Q3LFD5 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP41Q3LFD5 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.85■□□□□ 0.77
USP41Q3LFD5 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
USP41Q3LFD5 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
USP41Q3LFD5 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.85■□□□□ 0.77
USP41Q3LFD5 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
USP41Q3LFD5 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP41Q3LFD5 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP41Q3LFD5 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.84■□□□□ 0.77
USP41Q3LFD5 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.84■□□□□ 0.77
USP41Q3LFD5 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.84■□□□□ 0.77
USP41Q3LFD5 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.84■□□□□ 0.77
USP41Q3LFD5 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
USP41Q3LFD5 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.84■□□□□ 0.77
USP41Q3LFD5 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP41Q3LFD5 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.84■□□□□ 0.77
USP41Q3LFD5 PRELID1P1-202ENST00000567272 903 ntBASIC19.84■□□□□ 0.77
USP41Q3LFD5 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.84■□□□□ 0.77
USP41Q3LFD5 AP002414.4-201ENST00000589764 1148 ntBASIC19.84■□□□□ 0.77
USP41Q3LFD5 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP41Q3LFD5 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP41Q3LFD5 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP41Q3LFD5 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP41Q3LFD5 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP41Q3LFD5 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP41Q3LFD5 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
USP41Q3LFD5 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.84■□□□□ 0.77
USP41Q3LFD5 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP41Q3LFD5 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.84■□□□□ 0.77
USP41Q3LFD5 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP41Q3LFD5 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.84■□□□□ 0.77
USP41Q3LFD5 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP41Q3LFD5 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP41Q3LFD5 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
USP41Q3LFD5 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP41Q3LFD5 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.84■□□□□ 0.77
USP41Q3LFD5 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
USP41Q3LFD5 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.83■□□□□ 0.77
USP41Q3LFD5 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP41Q3LFD5 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP41Q3LFD5 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.83■□□□□ 0.77
USP41Q3LFD5 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP41Q3LFD5 AFG3L1P-217ENST00000557444 2447 ntBASIC19.83■□□□□ 0.77
USP41Q3LFD5 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
USP41Q3LFD5 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP41Q3LFD5 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP41Q3LFD5 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
USP41Q3LFD5 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.83■□□□□ 0.77
USP41Q3LFD5 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.83■□□□□ 0.77
USP41Q3LFD5 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP41Q3LFD5 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP41Q3LFD5 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP41Q3LFD5 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.83■□□□□ 0.77
USP41Q3LFD5 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP41Q3LFD5 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
USP41Q3LFD5 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.83■□□□□ 0.77
USP41Q3LFD5 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
USP41Q3LFD5 AC026396.1-201ENST00000419388 421 ntBASIC19.83■□□□□ 0.77
USP41Q3LFD5 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP41Q3LFD5 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP41Q3LFD5 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
USP41Q3LFD5 MIR3180-4-201ENST00000582223 153 ntBASIC19.83■□□□□ 0.77
USP41Q3LFD5 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.83■□□□□ 0.77
USP41Q3LFD5 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.83■□□□□ 0.77
USP41Q3LFD5 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.83■□□□□ 0.77
USP41Q3LFD5 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP41Q3LFD5 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP41Q3LFD5 AC006333.2-201ENST00000607957 2099 ntBASIC19.83■□□□□ 0.76
USP41Q3LFD5 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
USP41Q3LFD5 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.83■□□□□ 0.76
USP41Q3LFD5 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.83■□□□□ 0.76
USP41Q3LFD5 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.76
USP41Q3LFD5 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP41Q3LFD5 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP41Q3LFD5 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.83■□□□□ 0.76
USP41Q3LFD5 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
USP41Q3LFD5 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
USP41Q3LFD5 AL158211.5-201ENST00000623583 2518 ntBASIC19.82■□□□□ 0.76
USP41Q3LFD5 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.82■□□□□ 0.76
USP41Q3LFD5 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
USP41Q3LFD5 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP41Q3LFD5 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms