Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA4P78363 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.07■□□□□ 0.16
ABCA4P78363 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.07■□□□□ 0.16
ABCA4P78363 AP000867.3-201ENST00000524675 377 ntBASIC16.07■□□□□ 0.16
ABCA4P78363 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.07■□□□□ 0.16
ABCA4P78363 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.07■□□□□ 0.16
ABCA4P78363 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
ABCA4P78363 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC16.07■□□□□ 0.16
ABCA4P78363 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA4P78363 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA4P78363 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA4P78363 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA4P78363 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA4P78363 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA4P78363 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC16.06■□□□□ 0.16
ABCA4P78363 AC007952.6-201ENST00000573168 2673 ntBASIC16.06■□□□□ 0.16
ABCA4P78363 AC003957.1-201ENST00000625108 2673 ntBASIC16.06■□□□□ 0.16
ABCA4P78363 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA4P78363 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
ABCA4P78363 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
ABCA4P78363 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.06■□□□□ 0.16
ABCA4P78363 TSSC2-201ENST00000450217 709 ntBASIC16.06■□□□□ 0.16
ABCA4P78363 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA4P78363 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.06■□□□□ 0.16
ABCA4P78363 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.06■□□□□ 0.16
ABCA4P78363 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
ABCA4P78363 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA4P78363 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
ABCA4P78363 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA4P78363 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.06■□□□□ 0.16
ABCA4P78363 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA4P78363 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA4P78363 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA4P78363 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
ABCA4P78363 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
ABCA4P78363 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC16.06■□□□□ 0.16
ABCA4P78363 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA4P78363 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA4P78363 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.06■□□□□ 0.16
ABCA4P78363 KRT16P4-201ENST00000453883 522 ntBASIC16.06■□□□□ 0.16
ABCA4P78363 AC079602.3-201ENST00000623931 403 ntBASIC16.06■□□□□ 0.16
ABCA4P78363 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA4P78363 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ABCA4P78363 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA4P78363 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
ABCA4P78363 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA4P78363 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA4P78363 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.05■□□□□ 0.16
ABCA4P78363 AL109659.2-201ENST00000606809 1674 ntBASIC16.05■□□□□ 0.16
ABCA4P78363 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA4P78363 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.05■□□□□ 0.16
ABCA4P78363 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA4P78363 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.05■□□□□ 0.16
ABCA4P78363 Z83836.1-201ENST00000624605 1642 ntBASIC16.05■□□□□ 0.16
ABCA4P78363 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA4P78363 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
ABCA4P78363 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA4P78363 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA4P78363 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA4P78363 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
ABCA4P78363 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA4P78363 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
ABCA4P78363 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA4P78363 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA4P78363 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.05■□□□□ 0.16
ABCA4P78363 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.05■□□□□ 0.16
ABCA4P78363 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
ABCA4P78363 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA4P78363 BX640515.1-201ENST00000617215 977 ntBASIC16.05■□□□□ 0.16
ABCA4P78363 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA4P78363 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
ABCA4P78363 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC16.04■□□□□ 0.16
ABCA4P78363 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA4P78363 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA4P78363 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA4P78363 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA4P78363 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
ABCA4P78363 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.04■□□□□ 0.16
ABCA4P78363 TEX21P-204ENST00000641479 1693 ntBASIC16.04■□□□□ 0.16
ABCA4P78363 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.04■□□□□ 0.16
ABCA4P78363 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC16.04■□□□□ 0.16
ABCA4P78363 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA4P78363 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA4P78363 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA4P78363 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.04■□□□□ 0.16
ABCA4P78363 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.04■□□□□ 0.16
ABCA4P78363 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.04■□□□□ 0.16
ABCA4P78363 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.04■□□□□ 0.16
ABCA4P78363 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
ABCA4P78363 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
ABCA4P78363 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA4P78363 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA4P78363 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ABCA4P78363 TSPY12P-201ENST00000421279 868 ntBASIC16.03■□□□□ 0.16
ABCA4P78363 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.03■□□□□ 0.16
ABCA4P78363 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.03■□□□□ 0.16
ABCA4P78363 AL031008.1-201ENST00000619963 541 ntBASIC16.03■□□□□ 0.16
ABCA4P78363 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.03■□□□□ 0.16
ABCA4P78363 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ABCA4P78363 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms