Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC14.04□□□□□ -0.16
FOXA3P55318 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC14.04□□□□□ -0.16
FOXA3P55318 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
FOXA3P55318 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC14.04□□□□□ -0.16
FOXA3P55318 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC14.04□□□□□ -0.16
FOXA3P55318 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC14.04□□□□□ -0.16
FOXA3P55318 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC14.04□□□□□ -0.16
FOXA3P55318 PLLP-204ENST00000569059 665 ntTSL 3 BASIC14.04□□□□□ -0.16
FOXA3P55318 KRT18P61-201ENST00000585825 1298 ntBASIC14.04□□□□□ -0.16
FOXA3P55318 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC14.04□□□□□ -0.16
FOXA3P55318 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC14.04□□□□□ -0.16
FOXA3P55318 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
FOXA3P55318 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC14.04□□□□□ -0.16
FOXA3P55318 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 CEP83-AS1-201ENST00000623122 2482 ntBASIC14.04□□□□□ -0.16
FOXA3P55318 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC14.04□□□□□ -0.16
FOXA3P55318 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC14.04□□□□□ -0.16
FOXA3P55318 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
FOXA3P55318 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC14.04□□□□□ -0.16
FOXA3P55318 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC14.04□□□□□ -0.16
FOXA3P55318 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
FOXA3P55318 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
FOXA3P55318 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA3P55318 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC14.03□□□□□ -0.16
FOXA3P55318 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC14.03□□□□□ -0.16
FOXA3P55318 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
FOXA3P55318 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA3P55318 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
FOXA3P55318 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA3P55318 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA3P55318 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC14.03□□□□□ -0.16
FOXA3P55318 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA3P55318 KRT18P14-201ENST00000534205 1250 ntBASIC14.03□□□□□ -0.16
FOXA3P55318 AC142381.2-201ENST00000566120 298 ntBASIC14.03□□□□□ -0.16
FOXA3P55318 KRT8P8-201ENST00000434750 1448 ntBASIC14.03□□□□□ -0.16
FOXA3P55318 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA3P55318 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC14.03□□□□□ -0.16
FOXA3P55318 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC14.03□□□□□ -0.16
FOXA3P55318 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA3P55318 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA3P55318 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC14.03□□□□□ -0.16
FOXA3P55318 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA3P55318 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA3P55318 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA3P55318 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA3P55318 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
FOXA3P55318 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC14.03□□□□□ -0.16
FOXA3P55318 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC14.03□□□□□ -0.16
FOXA3P55318 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
FOXA3P55318 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA3P55318 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA3P55318 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA3P55318 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA3P55318 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC14.02□□□□□ -0.16
FOXA3P55318 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC14.02□□□□□ -0.16
FOXA3P55318 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC14.02□□□□□ -0.16
FOXA3P55318 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
FOXA3P55318 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
FOXA3P55318 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC14.02□□□□□ -0.16
FOXA3P55318 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC14.02□□□□□ -0.16
FOXA3P55318 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA3P55318 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC14.02□□□□□ -0.16
FOXA3P55318 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA3P55318 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
FOXA3P55318 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
FOXA3P55318 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA3P55318 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA3P55318 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC14.02□□□□□ -0.17
FOXA3P55318 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC14.02□□□□□ -0.17
FOXA3P55318 BRI3-207ENST00000539286 699 ntTSL 2 BASIC14.02□□□□□ -0.17
FOXA3P55318 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
FOXA3P55318 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA3P55318 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA3P55318 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
FOXA3P55318 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA3P55318 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC14.02□□□□□ -0.17
FOXA3P55318 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
FOXA3P55318 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms