Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VCPP55072 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
VCPP55072 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.99■□□□□ 0.79
VCPP55072 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VCPP55072 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VCPP55072 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
VCPP55072 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.99■□□□□ 0.79
VCPP55072 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VCPP55072 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VCPP55072 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VCPP55072 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VCPP55072 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VCPP55072 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.99■□□□□ 0.79
VCPP55072 PRSS44-201ENST00000515154 1146 ntBASIC19.99■□□□□ 0.79
VCPP55072 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.99■□□□□ 0.79
VCPP55072 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VCPP55072 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC19.99■□□□□ 0.79
VCPP55072 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.99■□□□□ 0.79
VCPP55072 AC140113.3-201ENST00000605663 199 ntBASIC19.99■□□□□ 0.79
VCPP55072 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.99■□□□□ 0.79
VCPP55072 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
VCPP55072 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
VCPP55072 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VCPP55072 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
VCPP55072 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
VCPP55072 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
VCPP55072 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.99■□□□□ 0.79
VCPP55072 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.99■□□□□ 0.79
VCPP55072 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCPP55072 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
VCPP55072 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
VCPP55072 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCPP55072 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.98■□□□□ 0.79
VCPP55072 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VCPP55072 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCPP55072 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCPP55072 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
VCPP55072 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.98■□□□□ 0.79
VCPP55072 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.98■□□□□ 0.79
VCPP55072 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.98■□□□□ 0.79
VCPP55072 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCPP55072 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCPP55072 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCPP55072 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.98■□□□□ 0.79
VCPP55072 AC004951.3-201ENST00000418645 1148 ntBASIC19.98■□□□□ 0.79
VCPP55072 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VCPP55072 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.98■□□□□ 0.79
VCPP55072 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC19.98■□□□□ 0.79
VCPP55072 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VCPP55072 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.98■□□□□ 0.79
VCPP55072 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VCPP55072 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.98■□□□□ 0.79
VCPP55072 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCPP55072 KRT8P45-201ENST00000414328 1447 ntBASIC19.98■□□□□ 0.79
VCPP55072 AC092338.2-201ENST00000568827 1415 ntBASIC19.98■□□□□ 0.79
VCPP55072 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCPP55072 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VCPP55072 AC120498.9-201ENST00000339021 3867 ntBASIC19.98■□□□□ 0.79
VCPP55072 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.98■□□□□ 0.79
VCPP55072 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCPP55072 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.98■□□□□ 0.79
VCPP55072 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VCPP55072 AC104417.2-201ENST00000562989 1793 ntBASIC19.98■□□□□ 0.79
VCPP55072 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
VCPP55072 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
VCPP55072 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
VCPP55072 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.97■□□□□ 0.79
VCPP55072 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VCPP55072 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.97■□□□□ 0.79
VCPP55072 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VCPP55072 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VCPP55072 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VCPP55072 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.97■□□□□ 0.79
VCPP55072 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VCPP55072 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VCPP55072 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.97■□□□□ 0.79
VCPP55072 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.97■□□□□ 0.79
VCPP55072 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.97■□□□□ 0.79
VCPP55072 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.97■□□□□ 0.79
VCPP55072 AC008622.2-201ENST00000617006 1229 ntBASIC19.97■□□□□ 0.79
VCPP55072 CROCCP3-202ENST00000420820 1947 ntBASIC19.97■□□□□ 0.79
VCPP55072 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VCPP55072 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
VCPP55072 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
VCPP55072 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VCPP55072 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VCPP55072 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.96■□□□□ 0.79
VCPP55072 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.96■□□□□ 0.79
VCPP55072 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VCPP55072 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.96■□□□□ 0.79
VCPP55072 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VCPP55072 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VCPP55072 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VCPP55072 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VCPP55072 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.96■□□□□ 0.79
VCPP55072 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
VCPP55072 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.96■□□□□ 0.79
VCPP55072 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.96■□□□□ 0.79
VCPP55072 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.96■□□□□ 0.79
VCPP55072 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms