Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CHRNA4P43681 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHRNA4P43681 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.85■□□□□ 0.61
CHRNA4P43681 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.85■□□□□ 0.61
CHRNA4P43681 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHRNA4P43681 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CHRNA4P43681 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHRNA4P43681 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CHRNA4P43681 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.85■□□□□ 0.61
CHRNA4P43681 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHRNA4P43681 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.85■□□□□ 0.61
CHRNA4P43681 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CHRNA4P43681 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHRNA4P43681 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHRNA4P43681 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.85■□□□□ 0.61
CHRNA4P43681 AC036111.1-201ENST00000533973 1582 ntBASIC18.85■□□□□ 0.61
CHRNA4P43681 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHRNA4P43681 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHRNA4P43681 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CHRNA4P43681 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHRNA4P43681 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHRNA4P43681 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHRNA4P43681 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.84■□□□□ 0.61
CHRNA4P43681 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHRNA4P43681 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.84■□□□□ 0.61
CHRNA4P43681 TSPY14P-201ENST00000303979 915 ntBASIC18.84■□□□□ 0.61
CHRNA4P43681 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.84■□□□□ 0.61
CHRNA4P43681 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHRNA4P43681 CCR12P-201ENST00000446203 998 ntBASIC18.84■□□□□ 0.61
CHRNA4P43681 TSPY17P-201ENST00000450329 467 ntBASIC18.84■□□□□ 0.61
CHRNA4P43681 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHRNA4P43681 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.84■□□□□ 0.61
CHRNA4P43681 NAPSB-206ENST00000562112 1266 ntBASIC18.84■□□□□ 0.61
CHRNA4P43681 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.84■□□□□ 0.61
CHRNA4P43681 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CHRNA4P43681 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.84■□□□□ 0.61
CHRNA4P43681 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHRNA4P43681 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
CHRNA4P43681 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CHRNA4P43681 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CHRNA4P43681 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHRNA4P43681 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.83■□□□□ 0.61
CHRNA4P43681 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHRNA4P43681 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.83■□□□□ 0.61
CHRNA4P43681 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHRNA4P43681 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.83■□□□□ 0.61
CHRNA4P43681 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
CHRNA4P43681 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.83■□□□□ 0.61
CHRNA4P43681 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHRNA4P43681 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHRNA4P43681 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHRNA4P43681 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHRNA4P43681 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHRNA4P43681 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHRNA4P43681 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.83■□□□□ 0.6
CHRNA4P43681 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHRNA4P43681 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.83■□□□□ 0.6
CHRNA4P43681 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.83■□□□□ 0.6
CHRNA4P43681 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.83■□□□□ 0.6
CHRNA4P43681 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
CHRNA4P43681 AC116562.4-202ENST00000641738 218 ntBASIC18.83■□□□□ 0.6
CHRNA4P43681 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHRNA4P43681 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
CHRNA4P43681 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHRNA4P43681 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHRNA4P43681 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.83■□□□□ 0.6
CHRNA4P43681 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.83■□□□□ 0.6
CHRNA4P43681 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHRNA4P43681 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CHRNA4P43681 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CHRNA4P43681 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHRNA4P43681 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA4P43681 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.82■□□□□ 0.6
CHRNA4P43681 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA4P43681 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
CHRNA4P43681 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.82■□□□□ 0.6
CHRNA4P43681 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.82■□□□□ 0.6
CHRNA4P43681 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA4P43681 EGLN1P1-201ENST00000531623 762 ntBASIC18.82■□□□□ 0.6
CHRNA4P43681 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.82■□□□□ 0.6
CHRNA4P43681 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
CHRNA4P43681 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.82■□□□□ 0.6
CHRNA4P43681 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.82■□□□□ 0.6
CHRNA4P43681 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA4P43681 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA4P43681 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA4P43681 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA4P43681 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA4P43681 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA4P43681 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA4P43681 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA4P43681 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA4P43681 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHRNA4P43681 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.82■□□□□ 0.6
CHRNA4P43681 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA4P43681 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA4P43681 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CHRNA4P43681 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA4P43681 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.81■□□□□ 0.6
CHRNA4P43681 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms