Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC15.82■□□□□ 0.12
USF1P22415 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
USF1P22415 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
USF1P22415 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
USF1P22415 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
USF1P22415 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
USF1P22415 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF1P22415 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF1P22415 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
USF1P22415 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC15.81■□□□□ 0.12
USF1P22415 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF1P22415 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF1P22415 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC15.81■□□□□ 0.12
USF1P22415 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF1P22415 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF1P22415 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC15.81■□□□□ 0.12
USF1P22415 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
USF1P22415 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
USF1P22415 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
USF1P22415 FXN-203ENST00000396366 922 ntTSL 2 BASIC15.81■□□□□ 0.12
USF1P22415 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF1P22415 PWWP2AP1-201ENST00000429776 2273 ntBASIC15.81■□□□□ 0.12
USF1P22415 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF1P22415 DUSP5P1-201ENST00000441325 1139 ntBASIC15.81■□□□□ 0.12
USF1P22415 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC15.81■□□□□ 0.12
USF1P22415 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF1P22415 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF1P22415 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC15.81■□□□□ 0.12
USF1P22415 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF1P22415 AC034232.1-201ENST00000506026 1064 ntBASIC15.81■□□□□ 0.12
USF1P22415 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
USF1P22415 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
USF1P22415 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
USF1P22415 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
USF1P22415 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
USF1P22415 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
USF1P22415 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC15.81■□□□□ 0.12
USF1P22415 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF1P22415 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
USF1P22415 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
USF1P22415 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
USF1P22415 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC15.8■□□□□ 0.12
USF1P22415 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC15.8■□□□□ 0.12
USF1P22415 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF1P22415 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC15.8■□□□□ 0.12
USF1P22415 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF1P22415 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF1P22415 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC15.8■□□□□ 0.12
USF1P22415 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC15.8■□□□□ 0.12
USF1P22415 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC15.8■□□□□ 0.12
USF1P22415 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
USF1P22415 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
USF1P22415 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC15.8■□□□□ 0.12
USF1P22415 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF1P22415 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF1P22415 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
USF1P22415 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
USF1P22415 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC15.8■□□□□ 0.12
USF1P22415 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF1P22415 TPM4P1-201ENST00000436100 807 ntBASIC15.8■□□□□ 0.12
USF1P22415 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC15.8■□□□□ 0.12
USF1P22415 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC15.8■□□□□ 0.12
USF1P22415 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC15.8■□□□□ 0.12
USF1P22415 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC15.8■□□□□ 0.12
USF1P22415 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC15.8■□□□□ 0.12
USF1P22415 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF1P22415 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC15.8■□□□□ 0.12
USF1P22415 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF1P22415 CLEC4GP1-201ENST00000596555 870 ntBASIC15.8■□□□□ 0.12
USF1P22415 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC15.8■□□□□ 0.12
USF1P22415 HYMAI.1-201ENST00000620949 238 ntBASIC15.8■□□□□ 0.12
USF1P22415 CR769767.2-201ENST00000622735 460 ntBASIC15.8■□□□□ 0.12
USF1P22415 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.8■□□□□ 0.12
USF1P22415 CLN6-214ENST00000636314 442 ntTSL 3 BASIC15.8■□□□□ 0.12
USF1P22415 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF1P22415 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC15.8■□□□□ 0.12
USF1P22415 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF1P22415 AC093484.2-201ENST00000580996 2166 ntBASIC15.8■□□□□ 0.12
USF1P22415 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
USF1P22415 AC005332.7-201ENST00000614046 2005 ntBASIC15.8■□□□□ 0.12
USF1P22415 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
USF1P22415 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
USF1P22415 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
USF1P22415 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
USF1P22415 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
USF1P22415 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
USF1P22415 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms